Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 1.5e-197 692.6 326 100.0
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 4.5e-154 548.1 336 78.0
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.1e-152 543.5 330 78.5
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 3.0e-150 535.4 344 76.7
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.0e-145 520.4 332 75.9
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 1.9e-144 516.2 332 75.3
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 7.2e-144 514.2 340 73.2
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 1.4e-142 510.0 308 78.9
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 3.3e-141 505.4 328 75.6
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 9.7e-141 503.8 327 73.4
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 2.8e-140 502.3 328 75.0
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 4.8e-140 501.5 331 73.4
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.8e-139 499.6 335 73.4
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 1.8e-139 499.6 329 75.1
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 9.1e-139 497.3 334 72.8
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 5.9e-138 494.6 327 72.8
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 7.7e-138 494.2 326 73.3
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 1.7e-137 493.0 333 70.9
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 3.8e-137 491.9 312 76.6
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 5.5e-136 488.0 339 71.4
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 1.6e-135 486.5 334 71.0
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 2.1e-135 486.1 334 71.0
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 2.7e-135 485.7 334 70.1
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.4e-134 483.4 336 70.2
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 1.4e-134 483.4 338 69.2
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 2.0e-133 479.6 334 70.1
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.6e-133 479.2 336 69.9
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.6e-133 479.2 336 69.9
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 3.3e-133 478.8 337 68.2
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 9.7e-133 477.2 338 70.1
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 1.3e-132 476.9 330 70.6
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 1.7e-132 476.5 343 67.1
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 2.2e-132 476.1 328 69.5
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 6.3e-132 474.6 339 68.4
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 6.3e-132 474.6 330 68.2
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 1.8e-131 473.0 330 70.0
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 3.1e-131 472.2 345 68.1
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 7.0e-131 471.1 331 70.4
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.2e-130 470.3 334 67.7
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 2.0e-130 469.5 330 68.8
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 1.3e-129 466.8 334 68.9
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 1.7e-129 466.5 337 67.7
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 2.2e-129 466.1 331 68.0
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 5.0e-129 464.9 332 67.5
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 1.5e-128 463.4 329 68.1
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.5e-128 463.4 337 66.8
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 1.5e-128 463.4 328 69.5
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 1.9e-128 463.0 337 66.5
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 5.5e-128 461.5 335 68.1
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 7.2e-128 461.1 338 66.6
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 1.2e-127 460.3 338 66.3
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 2.1e-127 459.5 347 65.4
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 1.0e-126 457.2 334 68.6
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 3.0e-126 455.7 332 66.9
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 4.0e-126 455.3 341 67.2
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 6.8e-126 454.5 312 72.8
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 8.8e-126 454.1 336 66.7
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.2e-125 453.8 291 74.9
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 2.6e-125 452.6 341 66.0
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 3.4e-125 452.2 339 65.5
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 2.2e-124 449.5 338 66.9
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 4.8e-124 448.4 350 63.4
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 1.8e-123 446.4 334 65.3
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 7.0e-123 444.5 334 65.3
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 9.1e-123 444.1 341 63.9
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 1.2e-122 443.7 330 66.7
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 2.0e-122 443.0 328 64.9
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 3.5e-122 442.2 334 64.4
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 4.5e-122 441.8 334 65.6
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 8.6e-121 437.6 346 62.4
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 2.5e-120 436.0 327 64.8
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 3.2e-120 435.6 339 63.1
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 8.0e-119 431.0 341 63.9
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.4e-118 430.3 341 64.8
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 5.7e-117 424.9 371 61.2
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.7e-116 423.3 321 64.2
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 2.2e-116 422.9 321 63.9
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 2.8e-116 422.5 365 58.6
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 8.3e-116 421.0 328 64.0
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 1.4e-115 420.2 366 58.7
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-115 420.2 317 64.0
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 3.1e-115 419.1 343 60.6
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 1.0e-113 414.1 331 62.2
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 1.7e-113 413.3 273 74.7
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 2.8e-111 406.0 395 56.2
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 1.0e-110 404.1 408 53.4
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 1.4e-110 403.7 398 54.0
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 2.6e-109 399.4 408 53.4
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 9.8e-109 397.5 326 59.8
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 6.4e-108 394.8 323 61.0
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 3.2e-107 392.5 415 51.1
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 2.7e-106 389.4 328 58.5
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 4.6e-106 388.7 424 47.9
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 1.3e-105 387.1 280 67.5
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 8.0e-103 377.9 266 70.7
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 1.4e-102 377.1 330 58.8
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 8.9e-102 374.4 334 57.2
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 1.2e-101 374.0 325 57.5
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 3.7e-100 369.0 297 64.3
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 8.3e-100 367.9 328 57.3
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.9e-99 366.7 291 62.2
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 2.0e-98 363.2 321 57.3
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 6.2e-95 351.7 327 56.0
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 4.9e-92 342.0 325 54.2
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 1.3e-89 334.0 323 53.3
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 8.6e-89 331.3 323 53.3
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 1.9e-88 330.1 328 53.4
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 1.9e-88 330.1 328 53.4
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 2.6e-85 319.7 324 51.5
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 9.2e-83 311.2 259 61.4
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 3.9e-81 305.8 358 46.4
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 4.3e-80 302.4 338 46.7
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 5.2e-78 295.4 328 47.9
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 1.3e-76 290.8 366 43.2
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 2.4e-75 286.6 493 36.1
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 9.3e-75 284.6 153 83.0
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 9.3e-75 284.6 401 41.6
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 7.8e-74 281.6 324 45.4
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 1.7e-73 280.4 422 38.4
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 3.9e-73 279.3 326 46.9
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 7.3e-72 275.0 324 46.9
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 1.4e-70 270.8 421 37.5
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 4.6e-66 255.8 322 43.2
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 8.7e-65 251.5 320 41.9
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 3.1e-62 243.0 331 41.7
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 5.3e-62 242.3 335 41.5
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 5.1e-57 225.7 222 58.1
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 3.7e-55 219.5 420 35.2
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 4.5e-53 212.6 203 58.1
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 1.3e-52 211.1 211 57.3
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 8.5e-44 181.8 98 79.6
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 2.0e-32 144.1 188 44.7
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 2.4e-30 137.1 254 35.4
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 1.1e-24 118.2 120 51.7
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 2.0e-24 117.5 162 42.6
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 1.2e-08 65.1 58 60.3
VMungo1383G0104 Vigna mungo HOM05D002394 ORTHO05D002508 2.0e-08 64.3 322 23.3
Glyma.18G264200 Glycine max HOM05D002394 ORTHO05D002508 2.6e-08 63.9 325 23.4
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 5.7e-08 62.8 327 24.8
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 7.5e-08 62.4 39 69.2
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 9.8e-08 62.0 326 24.2
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 9.8e-08 62.0 326 24.2
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 9.8e-08 62.0 327 24.2
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 1.3e-07 61.6 326 24.5
Glyma.08G242000 Glycine max HOM05D002394 ORTHO05D002508 1.7e-07 61.2 325 23.4
Phvul.008G035700 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 1.7e-07 61.2 322 22.7
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 1.7e-07 61.2 121 30.6
PSO017G0834 Papaver somniferum HOM05D002394 ORTHO05D002508 2.8e-07 60.5 321 23.4
PSO478G3218 Papaver somniferum HOM05D002394 ORTHO05D002508 2.8e-07 60.5 321 23.4
SEGI_33966 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 2.8e-07 60.5 127 33.1
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 4.8e-07 59.7 126 34.9
A03p07140 Brassica napus HOM05D002394 ORTHO05D002508 4.8e-07 59.7 326 24.5
BraA03t10036Z Brassica rapa HOM05D002394 ORTHO05D002508 4.8e-07 59.7 326 24.5
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 4.8e-07 59.7 326 23.6
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 6.3e-07 59.3 326 23.6
BcaB01g05056 Brassica carinata HOM05D002394 ORTHO05D002508 6.3e-07 59.3 326 24.5
C03p08130 Brassica napus HOM05D002394 ORTHO05D002508 6.3e-07 59.3 326 24.5
BolC3t13310H Brassica oleracea HOM05D002394 ORTHO05D002508 6.3e-07 59.3 326 24.5
Solyc02g088590.4 Solanum lycopersicum HOM05D002394 ORTHO05D002508 8.3e-07 58.9 328 23.5
Sopen02g033320 Solanum pennellii HOM05D002394 ORTHO05D002508 8.3e-07 58.9 328 23.5
Glyma.19G027700 Glycine max HOM05D002394 ORTHO05D002508 1.4e-06 58.2 325 24.6
Manes.01G098800 Manihot esculenta HOM05D002394 ORTHO05D002508 1.4e-06 58.2 328 24.7
CDE10G0416 Ceratophyllum demersum HOM05D002394 ORTHO05D002508 1.8e-06 57.8 127 32.3
Thhalv10014230m.g Eutrema salsugineum HOM05D002394 ORTHO05D002508 1.8e-06 57.8 326 23.9
Sc10g0003270 Simmondsia chinensis HOM05D002394 ORTHO05D002508 1.8e-06 57.8 123 32.5
Zm00001eb326680 Zea mays HOM05D002394 ORTHO05D002508 3.1e-06 57.0 126 33.3
Aa31LG9G16630 Aethionema arabicum HOM05D002394 ORTHO05D002508 4.1e-06 56.6 129 33.3
BcaB01g05054 Brassica carinata HOM05D002394 ORTHO05D002508 4.1e-06 56.6 127 33.1
Os03g0427000 Oryza sativa ssp. japonica HOM05D002394 ORTHO05D002508 4.1e-06 56.6 123 30.9
Manes.02G051300 Manihot esculenta HOM05D002394 ORTHO05D002508 5.4e-06 56.2 126 34.9
EL10Ac2g03083 Beta vulgaris HOM05D002394 ORTHO05D002508 7.0e-06 55.8 126 31.0
FAN05G1901 Fragaria x ananassa HOM05D002394 ORTHO05D002508 7.0e-06 55.8 328 23.8
Duzib147G0526 Durio zibethinus HOM05D002394 ORTHO05D002508 9.1e-06 55.5 124 32.3
FAN09G2709 Fragaria x ananassa HOM05D002394 ORTHO05D002508 9.1e-06 55.5 328 24.1
Rhsim10G0045400 Rhododendron simsii HOM05D002394 ORTHO05D002508 9.1e-06 55.5 126 34.1
PGSC0003DMG400001353 Solanum tuberosum HOM05D002394 ORTHO05D002508 9.1e-06 55.5 129 33.3


User provided reference genes

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