Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20680 Coffea canephora HOM05D006806 ORTHO05D008448 2.8e-45 184.9 92 100.0
Nitab4.5_0003901g0060 Nicotiana tabacum HOM05D006806 ORTHO05D008448 1.4e-15 86.3 83 51.8
Nitab4.5_0000619g0080 Nicotiana tabacum HOM05D006806 ORTHO05D008448 4.0e-15 84.7 82 51.2
Solyc09g074920.3 Solanum lycopersicum HOM05D006806 ORTHO05D008448 5.2e-15 84.3 81 53.1
Sopen09g029740 Solanum pennellii HOM05D006806 ORTHO05D008448 5.2e-15 84.3 81 53.1
CSS0020680 Camellia sinensis var. sinensis HOM05D006806 ORTHO05D008448 7.5e-14 80.5 78 56.4
CAN.G339.30 Capsicum annuum HOM05D006806 ORTHO05D008448 4.9e-13 77.8 81 49.4
SalBow3G1555 Salvia bowleyana HOM05D006806 ORTHO05D008448 1.1e-12 76.6 84 47.6
Peaxi162Scf00067g02523 Petunia axillaris HOM05D006806 ORTHO05D008448 1.4e-12 76.3 79 54.4
GSVIVG01027979001 Vitis vinifera HOM05D006806 ORTHO05D008448 4.1e-12 74.7 76 53.9
Actinidia24336 Actinidia chinensis HOM05D006806 ORTHO05D008448 9.2e-12 73.6 77 50.6
Oeu046692.2 Olea europaea HOM05D006806 ORTHO05D008448 1.2e-11 73.2 77 51.9
Haze_04900 Corylus avellana HOM05D006806 ORTHO05D008448 1.6e-11 72.8 74 48.6
Sabra14G0097600 Salix brachista HOM05D006806 ORTHO05D008448 5.9e-11 70.9 73 50.7
Aqoxy5G00723 Aquilegia oxysepala HOM05D006806 ORTHO05D008448 1.0e-10 70.1 73 50.7
vmacro02466 Vaccinium macrocarpon HOM05D006806 ORTHO05D008448 1.0e-10 70.1 81 48.1
Lsat_1_v5_gn_9_1100 Lactuca sativa HOM05D006806 ORTHO05D008448 3.8e-10 68.2 74 51.4
Nn3g21440 Nelumbo nucifera HOM05D006806 ORTHO05D008448 3.8e-10 68.2 75 52.0
Rhsim13G0012300 Rhododendron simsii HOM05D006806 ORTHO05D008448 3.8e-10 68.2 74 48.6
Cfa005945 Carpinus fangiana HOM05D006806 ORTHO05D008448 5.0e-10 67.8 73 45.2
Hma1.2p1_0209F.1_g088560 Hydrangea macrophylla HOM05D006806 ORTHO05D008448 5.0e-10 67.8 76 51.3
Lj1A1G13 Lonicera japonica HOM05D006806 ORTHO05D008448 5.0e-10 67.8 79 45.6
DCAR_002818 Daucus carota HOM05D006806 ORTHO05D008448 6.6e-10 67.4 76 50.0
Duzib133G0508 Durio zibethinus HOM05D006806 ORTHO05D008448 6.6e-10 67.4 73 49.3
Migut.D00198 Erythranthe guttata HOM05D006806 ORTHO05D008448 8.6e-10 67.0 83 43.4
HanXRQChr15g0465711 Helianthus annuus HOM05D006806 ORTHO05D008448 8.6e-10 67.0 75 45.3
Manes.05G063800 Manihot esculenta HOM05D006806 ORTHO05D008448 8.6e-10 67.0 84 46.4
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 1.1e-09 66.6 74 44.6
TAR365G0408 Trochodendron aralioides HOM05D006806 ORTHO05D008448 1.5e-09 66.2 75 49.3
MSTRG.21623 Avicennia marina HOM05D006806 ORTHO05D008448 2.5e-09 65.5 82 46.3
CsaV3_4G000670 Cucumis sativus L. HOM05D006806 ORTHO05D008448 4.3e-09 64.7 74 51.4
MELO3C017969.2 Cucumis melo HOM05D006806 ORTHO05D008448 7.3e-09 63.9 74 51.4
MBI19_g29222_MAGBIO Magnolia biondii HOM05D006806 ORTHO05D008448 7.3e-09 63.9 77 45.5
Cpa.g.sc9.212 Carica papaya HOM05D006806 ORTHO05D008448 9.5e-09 63.5 81 42.0
Hund05413 Selenicereus undatus HOM05D006806 ORTHO05D008448 9.5e-09 63.5 86 47.7
Sc05g0004190 Simmondsia chinensis HOM05D006806 ORTHO05D008448 9.5e-09 63.5 74 47.3
Thecc.01G297500 Theobroma cacao HOM05D006806 ORTHO05D008448 9.5e-09 63.5 66 51.5
COL.COLO4_23371 Corchorus olitorius HOM05D006806 ORTHO05D008448 1.2e-08 63.2 71 46.5
Potri.014G131200 Populus trichocarpa HOM05D006806 ORTHO05D008448 1.2e-08 63.2 68 51.5
Lj1C32T0 Lonicera japonica HOM05D006806 ORTHO05D008448 1.6e-08 62.8 75 45.3
ClCG10G010640 Citrullus lanatus HOM05D006806 ORTHO05D008448 2.1e-08 62.4 67 47.8
ATR0796G300 Amborella trichopoda HOM05D006806 ORTHO05D008448 3.6e-08 61.6 75 45.3
TWI59G0641 Tripterygium wilfordii HOM05D006806 ORTHO05D008448 3.6e-08 61.6 82 40.2
CANSAT25G0048 Cannabis sativa HOM05D006806 ORTHO05D008448 6.1e-08 60.8 69 47.8
CANSAT25G1656 Cannabis sativa HOM05D006806 ORTHO05D008448 6.1e-08 60.8 69 47.8
Eucgr.H01159 Eucalyptus grandis HOM05D006806 ORTHO05D008448 6.1e-08 60.8 72 44.4
Atru.chr5.1178 Acer truncatum HOM05D006806 ORTHO05D008448 1.0e-07 60.1 68 47.1
Prupe.8G258600 Prunus persica HOM05D006806 ORTHO05D008448 1.4e-07 59.7 67 49.3
MD11G1304900 Malus domestica HOM05D006806 ORTHO05D008448 1.8e-07 59.3 74 45.9
PGR119G0665 Punica granatum HOM05D006806 ORTHO05D008448 1.8e-07 59.3 77 42.9
Ciclev10021759m.g Citrus clementina HOM05D006806 ORTHO05D008448 2.3e-07 58.9 76 43.4
Gohir.D12G011300 Gossypium hirsutum HOM05D006806 ORTHO05D008448 2.3e-07 58.9 67 47.8
Gorai.008G011300 Gossypium raimondii HOM05D006806 ORTHO05D008448 2.3e-07 58.9 67 47.8
PGR119G2452 Punica granatum HOM05D006806 ORTHO05D008448 2.3e-07 58.9 82 42.7
RcHm_v2.0_Chr6g0293671 Rosa chinensis HOM05D006806 ORTHO05D008448 3.0e-07 58.5 67 50.7
Gohir.A12G010900 Gossypium hirsutum HOM05D006806 ORTHO05D008448 5.2e-07 57.8 71 45.1
Sed0021826 Sechium edule HOM05D006806 ORTHO05D008448 5.2e-07 57.8 73 42.5
CiPaw.07G106700 Carya illinoinensis HOM05D006806 ORTHO05D008448 8.9e-07 57.0 36 66.7
Thhalv10028943m.g Eutrema salsugineum HOM05D006806 ORTHO05D008448 8.9e-07 57.0 73 42.5
Sp6g02400 Schrenkiella parvula HOM05D006806 ORTHO05D008448 1.2e-06 56.6 67 46.3
Aa31LG5G2120 Aethionema arabicum HOM05D006806 ORTHO05D008448 1.5e-06 56.2 65 46.2
AUR62008620 Chenopodium quinoa HOM05D006806 ORTHO05D008448 1.5e-06 56.2 73 47.9
THA.LOC104801266 Tarenaya hassleriana HOM05D006806 ORTHO05D008448 1.5e-06 56.2 67 46.3
QL12p027175 Quercus lobata HOM05D006806 ORTHO05D008448 2.0e-06 55.8 30 80.0
BcaB01g02036 Brassica carinata HOM05D006806 ORTHO05D008448 3.4e-06 55.1 77 42.9
Carub.0006s3464 Capsella rubella HOM05D006806 ORTHO05D008448 4.4e-06 54.7 73 42.5
AUR62033171 Chenopodium quinoa HOM05D006806 ORTHO05D008448 5.7e-06 54.3 72 44.4
AL6G50560 Arabidopsis lyrata HOM05D006806 ORTHO05D008448 7.5e-06 53.9 73 46.6
FvH4_2g25440 Fragaria vesca HOM05D006806 ORTHO05D008448 7.5e-06 53.9 67 41.8
FAN15G0699 Fragaria x ananassa HOM05D006806 ORTHO05D008448 7.5e-06 53.9 67 41.8
VMungo0647G0123 Vigna mungo HOM05D006806 ORTHO05D008448 7.5e-06 53.9 73 37.0
EL10Ac7g17440 Beta vulgaris HOM05D006806 ORTHO05D008448 9.8e-06 53.5 87 39.1


User provided reference genes

Program Settings