Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 3.7e-244 847.8 436 100.0
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.0e-177 627.1 433 73.0
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 2.5e-176 622.5 430 73.5
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 1.6e-175 619.8 433 71.4
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 2.8e-175 619.0 434 73.3
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 4.7e-175 618.2 430 73.5
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 8.1e-175 617.5 441 71.9
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 1.1e-174 617.1 416 73.8
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 9.9e-173 610.5 431 71.9
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 9.9e-173 610.5 436 72.7
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 3.7e-172 608.6 440 72.5
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 1.6e-170 603.2 433 72.1
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 1.6e-170 603.2 428 71.3
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 1.0e-169 600.5 441 70.3
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 1.7e-169 599.7 407 74.0
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 2.3e-169 599.4 407 74.2
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 3.9e-169 598.6 427 69.6
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 5.1e-169 598.2 443 70.2
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 1.9e-168 596.3 436 70.2
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 4.3e-168 595.1 428 69.6
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 5.6e-168 594.7 429 71.1
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 9.5e-168 594.0 436 70.0
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 1.2e-167 593.6 434 68.7
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 2.1e-167 592.8 421 70.3
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 2.8e-167 592.4 425 70.4
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 2.8e-167 592.4 441 70.3
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 6.2e-167 591.3 434 69.6
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 1.1e-166 590.5 430 69.5
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 1.8e-166 589.7 427 69.1
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 5.2e-166 588.2 424 71.7
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 6.8e-166 587.8 392 76.0
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 2.6e-165 585.9 414 72.7
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 5.8e-165 584.7 441 69.2
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 1.3e-164 583.6 425 70.4
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 1.7e-164 583.2 406 72.4
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 1.7e-164 583.2 472 65.0
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 2.2e-164 582.8 417 71.2
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 4.9e-164 581.6 432 69.4
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 4.9e-164 581.6 430 70.2
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 6.4e-164 581.3 428 68.2
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 1.4e-163 580.1 398 73.6
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 1.4e-163 580.1 430 70.2
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 1.9e-163 579.7 411 72.0
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.9e-163 579.7 427 69.8
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 3.2e-163 578.9 414 71.0
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 4.2e-163 578.6 413 71.9
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 7.1e-163 577.8 417 70.3
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.1e-163 577.8 415 70.8
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.6e-162 576.6 430 69.5
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 1.6e-162 576.6 533 59.5
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 2.7e-162 575.9 430 70.2
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 2.7e-162 575.9 411 71.5
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 4.6e-162 575.1 429 69.9
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 1.7e-161 573.2 426 68.5
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 3.3e-160 568.9 430 67.2
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 4.3e-160 568.5 427 68.4
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 7.3e-160 567.8 430 68.8
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 7.3e-160 567.8 426 68.8
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 1.6e-159 566.6 419 70.4
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 8.1e-159 564.3 429 68.8
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 1.1e-158 563.9 407 68.3
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.4e-158 563.5 428 68.2
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 2.4e-158 562.8 412 69.7
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.4e-158 562.8 425 68.2
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 9.0e-158 560.8 408 69.9
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 2.0e-157 559.7 402 70.6
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 4.4e-157 558.5 425 67.5
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 4.9e-156 555.1 402 70.4
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 1.4e-155 553.5 433 66.1
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 3.2e-155 552.4 387 71.8
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 4.2e-155 552.0 429 65.3
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 2.1e-154 549.7 406 69.2
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 1.7e-153 546.6 434 65.9
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 1.1e-152 543.9 429 65.5
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 1.3e-151 540.4 429 64.8
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 6.2e-151 538.1 406 68.2
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 6.2e-151 538.1 439 64.5
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.8e-150 536.6 360 76.4
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 4.0e-150 535.4 447 62.9
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 9.0e-150 534.3 398 67.6
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 3.4e-149 532.3 415 66.7
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 7.6e-149 531.2 396 67.4
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 1.1e-147 527.3 397 68.5
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.2e-146 523.9 391 67.0
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 1.6e-146 523.5 400 64.8
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 4.6e-146 521.9 385 70.6
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 1.3e-143 513.8 431 64.3
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 1.3e-143 513.8 431 64.3
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 3.1e-142 509.2 364 71.4
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 5.3e-142 508.4 379 65.2
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 1.8e-137 493.4 408 60.5
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 5.1e-137 491.9 422 60.4
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 5.1e-137 491.9 369 69.6
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 2.7e-130 469.5 395 60.8
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 7.2e-123 444.9 420 58.3
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 2.7e-122 443.0 384 58.3
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 2.0e-120 436.8 316 70.3
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 2.8e-119 433.0 419 58.0
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 2.2e-116 423.3 331 66.8
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 7.9e-114 414.8 295 71.2
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 2.9e-108 396.4 394 56.1
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 1.6e-106 390.6 316 66.1
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 9.7e-104 381.3 294 63.9
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.2e-96 357.8 255 72.5
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 6.3e-95 352.1 385 49.6
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.5e-80 304.3 328 55.2
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 4.9e-79 299.3 219 73.5
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.2e-78 296.6 229 71.2
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 9.2e-78 295.0 386 47.2
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 2.9e-76 290.0 212 65.1
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.4e-65 254.6 384 41.1
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.2e-48 198.4 147 70.1
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.6e-45 188.0 120 76.7
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 8.1e-42 175.6 111 77.5
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 8.1e-42 175.6 131 70.2
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.0e-40 171.0 131 68.7
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.6e-40 169.1 131 67.9
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 4.3e-35 153.3 103 71.8
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.1e-33 148.7 103 76.7
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 2.4e-33 147.5 89 77.5
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 4.0e-33 146.7 89 76.4
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 1.4e-25 121.7 68 80.9
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 2.2e-23 114.4 68 77.9
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 9.3e-22 109.0 110 55.5
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 4.6e-21 106.7 86 58.1
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.3e-20 105.1 86 59.3
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 6.7e-20 102.8 112 53.6
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 5.3e-17 93.2 67 62.7
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 2.6e-16 90.9 49 79.6
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 5.0e-15 86.7 236 36.0
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 3.5e-13 80.5 41 82.9
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 3.5e-13 80.5 51 72.5
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 1.1e-11 75.5 41 82.9


User provided reference genes

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