Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20320 Coffea canephora HOM05D006618 ORTHO05D008291 3.2e-73 278.5 155 100.0
MSTRG.18188 Avicennia marina HOM05D006618 ORTHO05D008291 1.0e-39 167.2 164 66.5
Peaxi162Scf01039g00026 Petunia axillaris HOM05D006618 ORTHO05D008291 2.1e-37 159.5 163 60.7
Solyc06g084500.3 Solanum lycopersicum HOM05D006618 ORTHO05D008291 1.1e-36 157.1 158 61.4
Sopen06g035880 Solanum pennellii HOM05D006618 ORTHO05D008291 1.3e-34 150.2 160 60.0
PGSC0003DMG400024043 Solanum tuberosum HOM05D006618 ORTHO05D008291 2.2e-34 149.4 158 58.9
Hma1.2p1_0399F.1_g144140 Hydrangea macrophylla HOM05D006618 ORTHO05D008291 2.9e-34 149.1 165 58.8
Glyma.03G209500 Glycine max HOM05D006618 ORTHO05D008291 3.8e-34 148.7 161 56.5
Nitab4.5_0012299g0010 Nicotiana tabacum HOM05D006618 ORTHO05D008291 4.9e-34 148.3 158 60.1
Aqoxy5G00606 Aquilegia oxysepala HOM05D006618 ORTHO05D008291 1.9e-33 146.4 163 55.8
vmacro02504 Vaccinium macrocarpon HOM05D006618 ORTHO05D008291 9.3e-33 144.1 136 61.8
Phvul.001G202800 Phaseolus vulgaris HOM05D006618 ORTHO05D008291 2.1e-32 142.9 157 56.7
Sc17g0003540 Simmondsia chinensis HOM05D006618 ORTHO05D008291 3.5e-32 142.1 165 58.2
CAN.G1209.34 Capsicum annuum HOM05D006618 ORTHO05D008291 1.8e-31 139.8 161 57.1
Hund18083 Selenicereus undatus HOM05D006618 ORTHO05D008291 5.1e-31 138.3 164 55.5
VMungo1383G0445 Vigna mungo HOM05D006618 ORTHO05D008291 5.1e-31 138.3 161 53.4
Potri.014G134700 Populus trichocarpa HOM05D006618 ORTHO05D008291 6.7e-31 137.9 163 56.4
CSS0038517 Camellia sinensis var. sinensis HOM05D006618 ORTHO05D008291 1.1e-30 137.1 164 56.1
CiPaw.08G099900 Carya illinoinensis HOM05D006618 ORTHO05D008291 1.9e-30 136.3 161 55.9
Nitab4.5_0002093g0230 Nicotiana tabacum HOM05D006618 ORTHO05D008291 1.9e-30 136.3 158 58.2
Gorai.007G131200 Gossypium raimondii HOM05D006618 ORTHO05D008291 3.3e-30 135.6 152 54.6
Manes.05G067500 Manihot esculenta HOM05D006618 ORTHO05D008291 5.6e-30 134.8 160 55.0
Duzib211G0091 Durio zibethinus HOM05D006618 ORTHO05D008291 7.4e-30 134.4 162 55.6
Carub.0006s3388 Capsella rubella HOM05D006618 ORTHO05D008291 9.6e-30 134.0 161 53.4
Atru.chr5.1237 Acer truncatum HOM05D006618 ORTHO05D008291 2.1e-29 132.9 161 55.9
FvH4_2g24850 Fragaria vesca HOM05D006618 ORTHO05D008291 2.1e-29 132.9 154 50.0
FAN24G2031 Fragaria x ananassa HOM05D006618 ORTHO05D008291 2.1e-29 132.9 154 50.0
Oeu057561.4 Olea europaea HOM05D006618 ORTHO05D008008 2.1e-29 132.9 153 57.5
FAN27G1167 Fragaria x ananassa HOM05D006618 ORTHO05D008291 3.7e-29 132.1 154 49.4
BolC3t16012H Brassica oleracea HOM05D006618 ORTHO05D008291 4.8e-29 131.7 159 51.6
Dinv33000 Davidia involucrata HOM05D006618 ORTHO05D008291 4.8e-29 131.7 161 54.0
RcHm_v2.0_Chr6g0292701 Rosa chinensis HOM05D006618 ORTHO05D008291 6.2e-29 131.3 153 50.3
Aa31LG5G2680 Aethionema arabicum HOM05D006618 ORTHO05D008291 8.1e-29 131.0 156 53.2
Cfa006056 Carpinus fangiana HOM05D006618 ORTHO05D008291 1.8e-28 129.8 160 51.2
Lj1C37G5 Lonicera japonica HOM05D000143 ORTHO05D000072 2.4e-28 129.4 160 54.4
EL10Ac7g17390 Beta vulgaris HOM05D006618 ORTHO05D008291 3.1e-28 129.0 159 54.7
SGA_v2.0_scaffold11G05756 Striga asiatica HOM05D006618 ORTHO05D008291 5.3e-28 128.3 160 53.1
Nn3g21320 Nelumbo nucifera HOM05D006618 ORTHO05D008291 6.9e-28 127.9 156 54.5
Sed0009421 Sechium edule HOM05D006618 ORTHO05D008291 6.9e-28 127.9 163 50.9
C03p37140 Brassica napus HOM05D006618 ORTHO05D008291 9.0e-28 127.5 158 49.4
BcaC01g06702 Brassica carinata HOM05D006618 ORTHO05D008291 1.2e-27 127.1 158 49.4
AL6G49760 Arabidopsis lyrata HOM05D006618 ORTHO05D008291 1.5e-27 126.7 159 50.9
Duzib138G1186 Durio zibethinus HOM05D006618 ORTHO05D008291 2.0e-27 126.3 163 54.6
MD03G1276600 Malus domestica HOM05D006618 ORTHO05D008291 2.0e-27 126.3 196 44.9
PGR119G1443 Punica granatum HOM05D006618 ORTHO05D008291 2.6e-27 125.9 168 50.6
COL.COLO4_08018 Corchorus olitorius HOM05D006618 ORTHO05D008291 4.5e-27 125.2 159 52.2
AT4G03180 Arabidopsis thaliana HOM05D006618 ORTHO05D008291 5.8e-27 124.8 160 51.2
MD11G1299100 Malus domestica HOM05D006618 ORTHO05D008291 5.8e-27 124.8 198 43.4
Prupe.8G253400 Prunus persica HOM05D006618 ORTHO05D008291 7.6e-27 124.4 188 45.7
Thhalv10028994m.g Eutrema salsugineum HOM05D006618 ORTHO05D008291 1.0e-26 124.0 158 52.5
Glyma.19G206900 Glycine max HOM05D006618 ORTHO05D008291 1.0e-26 124.0 161 51.6
Sed0008392 Sechium edule HOM05D006618 ORTHO05D008291 1.0e-26 124.0 163 50.3
Medtr7g108100 Medicago truncatula HOM05D006618 ORTHO05D008291 1.3e-26 123.6 160 51.2
THA.LOC104801197 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 1.7e-26 123.2 162 51.2
SalBow3G3170 Salvia bowleyana HOM05D006618 ORTHO05D008291 2.2e-26 122.9 163 50.3
CARHR251610 Cardamine hirsuta HOM05D006618 ORTHO05D008291 2.9e-26 122.5 159 50.3
Sp6g03210 Schrenkiella parvula HOM05D006618 ORTHO05D008291 2.9e-26 122.5 155 50.3
Haze_04826 Corylus avellana HOM05D006618 ORTHO05D008291 3.8e-26 122.1 200 43.0
PSO170G6580 Papaver somniferum HOM05D006618 ORTHO05D008291 3.8e-26 122.1 164 49.4
Haze_04795 Corylus avellana HOM05D006618 ORTHO05D008291 6.5e-26 121.3 201 42.8
QL12p024238 Quercus lobata HOM05D006618 ORTHO05D008291 6.5e-26 121.3 154 51.3
Lj1g0015584 Lotus japonicus HOM05D006618 ORTHO05D008291 1.1e-25 120.6 160 48.1
Lalb_Chr18g0047451 Lupinus albus HOM05D006618 ORTHO05D008291 1.1e-25 120.6 163 51.5
FAN15G0256 Fragaria x ananassa HOM05D006618 ORTHO05D008291 1.4e-25 120.2 154 46.8
Gohir.A11G117500 Gossypium hirsutum HOM05D006618 ORTHO05D008291 1.9e-25 119.8 187 44.9
PSO210G2131 Papaver somniferum HOM05D006618 ORTHO05D008291 1.9e-25 119.8 164 48.8
TWI12G0445 Tripterygium wilfordii HOM05D006618 ORTHO05D008291 4.2e-25 118.6 164 48.2
TAR362G0318 Trochodendron aralioides HOM05D006618 ORTHO05D008291 7.1e-25 117.9 162 53.7
Ciclev10022357m.g Citrus clementina HOM05D006618 ORTHO05D008291 1.6e-24 116.7 162 49.4
Eucgr.H01207 Eucalyptus grandis HOM05D006618 ORTHO05D008291 1.6e-24 116.7 164 51.2
Ah.08g212660 Amaranthus hybridus HOM05D006618 ORTHO05D008291 3.5e-24 115.5 163 50.3
AUR62036645 Chenopodium quinoa HOM05D006618 ORTHO05D008291 4.6e-24 115.2 162 48.1
Rhsim13G0016600 Rhododendron simsii HOM05D006618 ORTHO05D008291 1.8e-23 113.2 159 47.2
Lsat_1_v5_gn_9_4841 Lactuca sativa HOM05D006618 ORTHO05D008291 2.3e-23 112.8 157 51.0
BcaB05g23692 Brassica carinata HOM05D006618 ORTHO05D008291 3.9e-23 112.1 162 47.5
Ca_23188_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 6.7e-23 111.3 161 49.1
CsaV3_7G028720 Cucumis sativus L. HOM05D006618 ORTHO05D008291 6.7e-23 111.3 165 46.7
ClCG09G006430 Citrullus lanatus HOM05D006618 ORTHO05D008291 8.7e-23 110.9 164 45.7
Zm00001eb410530 Zea mays HOM05D006618 ORTHO05D008291 1.1e-22 110.5 146 50.7
MELO3C015900.2 Cucumis melo HOM05D006618 ORTHO05D008291 1.3e-21 107.1 180 43.9
Sabra14G0100400 Salix brachista HOM05D006618 ORTHO05D008291 4.8e-21 105.1 163 48.5
TPR.G32314 Trifolium pratense HOM05D006618 ORTHO05D008291 8.2e-21 104.4 176 44.9
Migut.D00152 Erythranthe guttata HOM05D006618 ORTHO05D008291 1.4e-20 103.6 182 43.4
Thecc.01G291700 Theobroma cacao HOM05D006618 ORTHO05D008291 1.8e-20 103.2 161 47.8
BcaB01g02511 Brassica carinata HOM05D006618 ORTHO05D008291 3.1e-20 102.4 159 45.9
Zm00001eb137700 Zea mays HOM05D006618 ORTHO05D008291 3.1e-20 102.4 138 47.8
Os12g0538100 Oryza sativa ssp. japonica HOM05D006618 ORTHO05D008291 4.0e-20 102.1 144 51.4
HanXRQChr15g0466141 Helianthus annuus HOM05D006618 ORTHO05D008291 1.5e-19 100.1 159 49.7
Psat3g024440 Pisum sativum HOM05D006618 ORTHO05D008291 2.0e-19 99.8 160 45.6
ECA247G1808 Erigeron canadensis HOM05D006618 ORTHO05D008291 3.4e-19 99.0 161 45.3
ATR0706G074 Amborella trichopoda HOM05D006618 ORTHO05D008291 1.7e-18 96.7 170 44.1
HPP92_017865 Vanilla planifolia HOM05D006618 ORTHO05D008291 3.8e-18 95.5 163 46.6
AUR62034630 Chenopodium quinoa HOM05D006618 ORTHO05D008291 8.4e-18 94.4 200 40.5
BcaC03g16213 Brassica carinata HOM05D006618 ORTHO05D008291 1.9e-17 93.2 160 44.4
BolC2t10017H Brassica oleracea HOM05D006618 ORTHO05D008291 1.9e-17 93.2 160 44.4
Actinidia24851 Actinidia chinensis HOM05D006618 ORTHO05D008291 9.3e-17 90.9 114 52.6
GSVIVG01010994001 Vitis vinifera HOM05D006618 ORTHO05D008291 1.6e-16 90.1 123 50.4
FAN20G2846 Fragaria x ananassa HOM05D006618 ORTHO05D008291 2.7e-16 89.4 132 43.2
MBI19_g13630_MAGBIO Magnolia biondii HOM05D006618 ORTHO05D008291 7.9e-16 87.8 138 47.1
A02p25130 Brassica napus HOM05D006618 ORTHO05D008291 2.5e-14 82.8 160 42.5
C02p39890 Brassica napus HOM05D006618 ORTHO05D008291 3.3e-14 82.4 160 41.9
arahy.Tifrunner.gnm1.ann1.1H6IZY Arachis hypogaea HOM05D006618 ORTHO05D008291 5.7e-14 81.6 136 41.9
BraA02t07501Z Brassica rapa HOM05D006618 ORTHO05D008291 9.7e-14 80.9 160 41.2
Ca_09115_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 8.2e-13 77.8 150 42.7
arahy.Tifrunner.gnm1.ann1.160DKY Arachis hypogaea HOM05D006618 ORTHO05D008291 1.4e-12 77.0 137 42.3
Gohir.D11G122400 Gossypium hirsutum HOM05D006618 ORTHO05D008291 4.1e-12 75.5 123 45.5
CANSAT25G1401 Cannabis sativa HOM05D006618 ORTHO05D008291 2.0e-11 73.2 150 40.0
Cfa006024 Carpinus fangiana HOM05D006618 ORTHO05D008291 1.7e-10 70.1 66 59.1
unitig_22.g5246 Utricularia gibba HOM05D006618 ORTHO05D008291 5.0e-10 68.6 156 36.5
Actinidia21075 Actinidia chinensis HOM05D006618 ORTHO05D008291 1.2e-08 63.9 68 57.4
Atru.chr5.1270 Acer truncatum HOM05D006618 ORTHO05D008291 1.6e-08 63.5 91 46.2
arahy.Tifrunner.gnm1.ann1.MTA467 Arachis hypogaea HOM05D006618 ORTHO05D008291 1.4e-07 60.5 156 35.3
THA.LOC104827373 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 3.9e-07 58.9 119 39.5
arahy.Tifrunner.gnm1.ann1.915FC2 Arachis hypogaea HOM05D006618 ORTHO05D008291 5.1e-07 58.5 139 38.1
BcaB05g22921 Brassica carinata HOM05D001082 ORTHO05D008291 2.5e-06 56.2 132 37.1


User provided reference genes

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