Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20290 Coffea canephora HOM05D008278 ORTHO05D009926 7.1e-29 130.2 79 100.0
Actinidia21077 Actinidia chinensis HOM05D008278 ORTHO05D009926 2.7e-12 75.1 40 77.5
Glyma.19G206602 Glycine max HOM05D008278 ORTHO05D009926 2.3e-11 72.0 74 63.5
Glyma.03G209200 Glycine max HOM05D008278 ORTHO05D009926 5.1e-11 70.9 45 64.4
Hma1.2p1_0209F.1_g089030 Hydrangea macrophylla HOM05D008278 ORTHO05D009926 5.1e-11 70.9 47 72.3
Thecc.01G291200 Theobroma cacao HOM05D008278 ORTHO05D009926 6.7e-11 70.5 43 67.4
Medtr7g108080 Medicago truncatula HOM05D008278 ORTHO05D009926 1.1e-10 69.7 42 69.0
CSS0040059 Camellia sinensis var. sinensis HOM05D008278 ORTHO05D009926 1.5e-10 69.3 71 69.0
PGR119G0374 Punica granatum HOM05D008278 ORTHO05D009926 1.9e-10 68.9 37 73.0
CiPaw.07G100700 Carya illinoinensis HOM05D008278 ORTHO05D009926 3.3e-10 68.2 47 63.8
COL.COLO4_08021 Corchorus olitorius HOM05D008278 ORTHO05D009926 3.3e-10 68.2 49 61.2
Sc24g0003970 Simmondsia chinensis HOM05D008278 ORTHO05D009926 4.3e-10 67.8 47 61.7
Actinidia24853 Actinidia chinensis HOM05D008278 ORTHO05D009926 9.6e-10 66.6 51 60.8
TWI14G0577 Tripterygium wilfordii HOM05D008278 ORTHO05D009926 9.6e-10 66.6 68 63.2
Duzib138G1619 Durio zibethinus HOM05D008278 ORTHO05D009926 1.6e-09 65.9 44 65.9
Lj1g0017232 Lotus japonicus HOM05D008278 ORTHO05D009926 1.6e-09 65.9 74 54.1
Psat0s1883g0120 Pisum sativum HOM05D008278 ORTHO05D009926 2.1e-09 65.5 72 62.5
Phvul.001G202500 Phaseolus vulgaris HOM05D008278 ORTHO05D009926 3.7e-09 64.7 47 70.2
CiPaw.08G100100 Carya illinoinensis HOM05D008278 ORTHO05D009926 4.8e-09 64.3 85 56.5
Psat3g024600 Pisum sativum HOM05D008278 ORTHO05D009926 4.8e-09 64.3 72 65.3
TWI59G0540 Tripterygium wilfordii HOM05D008278 ORTHO05D009926 4.8e-09 64.3 64 75.0
TWI09G1464 Tripterygium wilfordii HOM05D008278 ORTHO05D009926 1.8e-08 62.4 44 63.6
Gohir.A11G117700 Gossypium hirsutum HOM05D008278 ORTHO05D009926 3.1e-08 61.6 45 62.2
Gorai.007G131400 Gossypium raimondii HOM05D008278 ORTHO05D009926 3.1e-08 61.6 45 62.2
Phvul.006G097300 Phaseolus vulgaris HOM05D008278 ORTHO05D009926 1.5e-07 59.3 47 61.7
RcHm_v2.0_Chr6g0292641 Rosa chinensis HOM05D008278 ORTHO05D009926 1.5e-07 59.3 44 59.1
Gohir.D11G122600 Gossypium hirsutum HOM05D008278 ORTHO05D009926 2.0e-07 58.9 42 61.9
Thecc.04G277500 Theobroma cacao HOM05D008278 ORTHO05D009926 2.6e-07 58.5 77 53.2
COL.COLO4_13623 Corchorus olitorius HOM05D008278 ORTHO05D009926 4.5e-07 57.8 88 44.3
Eucgr.H03768 Eucalyptus grandis HOM05D008278 ORTHO05D009926 7.6e-07 57.0 38 55.3
Dinv32998 Davidia involucrata HOM05D000003 ORTHO05D000126 9.9e-07 56.6 28 78.6
Duzib151G0456 Durio zibethinus HOM05D008278 ORTHO05D009926 1.7e-06 55.8 87 58.6
Thhalv10001693m.g Eutrema salsugineum HOM05D008278 ORTHO05D009926 1.7e-06 55.8 43 62.8
Dinv04275 Davidia involucrata HOM05D008278 ORTHO05D009926 2.2e-06 55.5 70 47.1
QL12p024203 Quercus lobata HOM05D008278 ORTHO05D009926 2.9e-06 55.1 67 65.7
Rhsim01G0280400 Rhododendron simsii HOM05D008278 ORTHO05D009926 2.9e-06 55.1 55 49.1
Aqoxy5G00615 Aquilegia oxysepala HOM05D008278 ORTHO05D009926 4.9e-06 54.3 76 50.0
Carub.0004s3061 Capsella rubella HOM05D008278 ORTHO05D009926 4.9e-06 54.3 45 57.8
FvH4_2g24810 Fragaria vesca HOM05D008278 ORTHO05D009926 8.4e-06 53.5 86 59.3
FAN24G0745 Fragaria x ananassa HOM05D008278 ORTHO05D009926 8.4e-06 53.5 86 59.3
MD03G1276800 Malus domestica HOM05D008278 ORTHO05D009926 8.4e-06 53.5 47 55.3


User provided reference genes

Program Settings