Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 2156.3 1154 100.0
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1635.5 1154 76.1
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1599.3 1156 72.6
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1596.3 1136 72.4
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1582.8 1155 71.4
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1579.7 1160 72.3
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1567.4 1158 71.4
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1566.6 1136 72.0
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1549.3 1162 70.9
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1539.2 1224 69.2
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1535.4 1150 70.0
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1531.2 1148 71.3
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1528.8 1266 66.2
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1527.3 1153 70.4
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1512.3 1159 68.9
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1509.2 1155 69.8
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1508.8 1193 67.2
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1506.5 1141 69.9
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1496.5 1016 74.8
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1492.6 1133 69.2
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1490.3 1129 68.3
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1486.9 1138 68.5
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1485.7 1127 67.1
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1483.8 1126 67.5
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1483.4 1133 68.8
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1481.1 1126 70.1
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1478.8 1118 70.7
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1469.5 1143 66.1
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1468.8 1151 67.2
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1466.8 1078 72.2
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1466.8 1121 69.2
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1450.6 1160 68.3
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1449.1 1144 68.4
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1441.8 1159 68.1
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1430.2 1167 67.3
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1427.2 1154 64.3
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1422.9 1177 63.2
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1421.0 1158 64.5
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1419.4 1140 65.2
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1417.9 1133 67.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1416.4 1007 71.9
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1413.3 1092 68.4
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1411.4 1156 63.7
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1409.8 1162 64.3
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1409.0 1156 65.0
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1394.0 1156 63.2
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1392.1 1124 64.9
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1390.6 1158 63.4
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1388.6 1158 63.3
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1385.2 1086 66.4
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1384.0 1098 66.1
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1383.6 1133 65.2
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1383.6 1135 65.3
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1381.7 1039 67.3
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1378.6 1124 65.7
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1378.6 1176 62.8
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1376.7 1414 54.4
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1376.3 1133 63.6
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1375.9 1157 64.2
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1375.5 1093 65.2
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1375.1 1135 64.1
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1373.6 1098 66.7
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1369.0 1095 65.4
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1367.8 1129 64.4
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1366.3 1130 64.4
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1365.9 1130 64.2
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1364.4 1093 64.9
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1364.0 1130 64.3
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1363.2 1044 65.5
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1357.8 1130 64.2
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1354.3 1048 65.1
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1354.0 1145 65.4
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1353.6 1155 65.1
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1352.4 1044 65.0
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1349.3 1160 62.0
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1349.0 1124 64.4
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1344.3 1044 64.7
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1337.0 1091 62.9
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1336.2 1045 64.6
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1335.1 1162 60.4
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1332.0 1120 63.6
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1331.6 1130 62.4
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1326.2 1044 63.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1313.1 1044 63.2
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1310.4 1134 62.4
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1308.1 1046 63.1
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1305.4 1129 63.5
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1303.1 1042 63.0
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1302.3 1045 62.9
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1300.0 1056 62.5
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1289.2 1128 63.4
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1268.4 1101 59.6
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1255.7 919 68.9
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1245.7 920 69.3
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1239.2 1010 63.3
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1234.2 985 63.4
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1231.9 1013 61.7
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1224.9 1072 58.5
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1195.6 1050 58.6
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1189.9 1054 59.8
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1174.5 1055 56.8
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1132.1 888 68.7
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1125.9 1064 57.6
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 0.0e+00 1119.0 1066 56.3
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 7.9e-312 1074.7 837 67.1
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.1e-310 1069.3 679 78.2
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 4.7e-307 1058.1 1135 52.6
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.3e-304 1050.0 960 57.1
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 2.4e-295 1019.2 1001 52.6
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 8.7e-285 984.2 1002 50.4
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 3.0e-277 959.1 784 63.1
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.5e-265 920.2 967 49.2
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 9.7e-260 901.0 663 70.4
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 3.6e-246 855.9 1021 46.8
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.4e-234 816.6 595 69.6
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.7e-227 792.7 554 74.9
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.7e-227 792.7 554 74.9
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 9.2e-210 734.9 1016 41.8
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.0e-152 545.4 396 71.7
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.2e-95 355.9 399 49.9
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 1.5e-66 259.2 204 65.7
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 3.2e-61 241.5 581 29.4
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 7.3e-58 230.3 209 58.4
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.6e-57 229.2 143 79.0
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 1.5e-50 206.1 164 61.6
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 3.2e-45 188.3 171 57.9
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 4.6e-44 184.5 225 47.6
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.1e-40 173.3 174 55.2
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 6.9e-40 170.6 184 49.5
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.1e-37 163.3 628 23.6
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 4.6e-36 157.9 366 30.1
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 9.7e-34 150.2 137 58.4
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.8e-30 138.3 121 57.9
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 2.6e-23 115.5 97 60.8
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 7.9e-20 104.0 243 29.6
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 9.1e-16 90.5 106 45.3
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.2e-13 82.0 80 60.0
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 2.7e-12 79.0 77 55.8
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.8e-11 76.3 272 26.8
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 8.8e-11 73.9 68 54.4
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 2.8e-09 68.9 114 41.2
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 3.7e-09 68.6 38 73.7
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 7.0e-08 64.3 60 45.0
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 7.7e-07 60.8 85 47.1
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 2.9e-06 58.9 99 42.4
Solyc09g037050.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 3.8e-06 58.5 56 53.6
Solyc03g051710.1 Solanum lycopersicum HOM05D004682 ORTHO05D006197 8.5e-06 57.4 49 53.1


User provided reference genes

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