Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 1.7e-76 289.3 143 100.0
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 6.1e-55 217.6 142 75.4
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 1.8e-54 216.1 141 75.2
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.8e-54 216.1 141 75.2
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 4.0e-54 214.9 142 73.9
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 4.0e-54 214.9 141 73.0
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 4.0e-54 214.9 142 72.5
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 6.7e-54 214.2 141 74.5
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.5e-53 213.0 142 74.6
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 7.5e-53 210.7 138 74.6
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 7.5e-53 210.7 142 69.0
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 7.5e-53 210.7 142 68.3
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 1.3e-52 209.9 141 72.3
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 1.7e-52 209.5 142 69.0
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.7e-52 209.5 142 72.5
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 2.2e-52 209.1 142 70.4
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 2.2e-52 209.1 142 70.4
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 8.2e-52 207.2 142 70.4
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 8.2e-52 207.2 139 69.8
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 8.2e-52 207.2 139 71.9
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.4e-51 206.5 142 70.4
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 1.4e-51 206.5 139 71.2
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.4e-51 206.5 142 71.8
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.8e-51 206.1 142 69.0
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 2.4e-51 205.7 142 67.6
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 5.3e-51 204.5 144 69.4
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 5.3e-51 204.5 141 70.9
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 7.0e-51 204.1 143 69.2
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 9.1e-51 203.8 142 69.7
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 1.2e-50 203.4 138 70.3
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 2.0e-50 202.6 142 67.6
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 2.0e-50 202.6 143 66.4
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 2.0e-50 202.6 142 70.4
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 3.5e-50 201.8 142 68.3
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 3.5e-50 201.8 147 70.1
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 4.5e-50 201.4 144 69.4
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 4.5e-50 201.4 141 70.9
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 5.9e-50 201.1 147 69.4
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 1.0e-49 200.3 142 69.0
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 1.0e-49 200.3 142 66.9
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 1.0e-49 200.3 142 66.9
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 1.0e-49 200.3 142 69.0
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 1.7e-49 199.5 142 66.2
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 1.7e-49 199.5 142 67.6
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 1.7e-49 199.5 141 66.7
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 2.2e-49 199.1 139 69.8
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 8.5e-49 197.2 143 69.9
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.5e-48 196.4 142 66.2
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 1.5e-48 196.4 139 66.9
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 1.9e-48 196.1 141 69.5
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 4.2e-48 194.9 138 67.4
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 4.2e-48 194.9 138 67.4
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 7.2e-48 194.1 142 69.7
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 7.2e-48 194.1 142 69.7
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 7.2e-48 194.1 142 66.9
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 7.2e-48 194.1 137 70.1
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 9.4e-48 193.7 139 64.7
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 1.2e-47 193.4 142 65.5
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 1.2e-47 193.4 144 68.1
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 1.2e-47 193.4 139 66.2
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 2.1e-47 192.6 142 66.9
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 2.7e-47 192.2 141 65.2
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 3.6e-47 191.8 144 67.4
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 4.7e-47 191.4 140 68.6
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 8.0e-47 190.7 144 68.1
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 1.0e-46 190.3 139 64.0
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 1.4e-46 189.9 118 78.0
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 3.0e-46 188.7 139 66.2
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 3.0e-46 188.7 144 67.4
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 4.0e-46 188.3 142 63.4
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 4.0e-46 188.3 142 68.3
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 4.0e-46 188.3 118 76.3
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 5.2e-46 188.0 142 64.8
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 5.2e-46 188.0 139 62.6
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 6.8e-46 187.6 139 62.6
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 6.8e-46 187.6 139 62.6
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 6.8e-46 187.6 139 62.6
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 1.2e-45 186.8 139 62.6
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 2.0e-45 186.0 139 61.9
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 9.8e-45 183.7 119 72.3
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 1.3e-44 183.3 139 63.3
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 1.7e-44 183.0 116 73.3
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 1.7e-44 183.0 142 61.3
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 2.2e-44 182.6 142 62.0
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 6.3e-44 181.0 141 61.7
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 8.3e-44 180.6 139 62.6
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 8.3e-44 180.6 141 61.0
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 1.1e-43 180.3 142 61.3
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 1.4e-43 179.9 138 63.0
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 2.4e-43 179.1 119 72.3
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 2.4e-43 179.1 119 72.3
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 4.1e-43 178.3 133 66.2
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 4.1e-43 178.3 133 66.2
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 7.0e-43 177.6 142 60.6
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 7.0e-43 177.6 142 60.6
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 7.0e-43 177.6 119 72.3
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 7.0e-43 177.6 139 62.6
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 2.7e-42 175.6 142 59.9
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 4.5e-42 174.9 112 73.2
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 1.1e-40 170.2 141 59.6
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 1.9e-40 169.5 147 59.2
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 3.3e-40 168.7 137 59.1
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 3.3e-40 168.7 115 69.6
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 4.2e-40 168.3 145 60.7
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 9.5e-40 167.2 119 67.2
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 2.1e-39 166.0 143 58.7
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 6.1e-39 164.5 142 56.3
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.0e-38 163.7 122 67.2
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 5.2e-38 161.4 115 64.3
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 4.4e-37 158.3 114 64.9
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 5.7e-37 157.9 125 64.8
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 7.5e-37 157.5 136 58.8
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 9.8e-37 157.1 139 58.3
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 6.6e-33 144.4 142 52.1
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 4.3e-32 141.7 112 63.4
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 1.2e-31 140.2 96 71.9
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 5.2e-30 134.8 90 72.2
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 2.0e-29 132.9 114 53.5
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 5.8e-29 131.3 118 54.2
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 7.5e-29 131.0 118 50.8
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 1.7e-28 129.8 116 54.3
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 3.7e-28 128.6 94 62.8
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 2.4e-27 125.9 114 51.8
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 2.4e-27 125.9 116 52.6
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 3.0e-25 119.0 90 62.2
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 3.0e-25 119.0 84 66.7
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 8.6e-25 117.5 88 63.6
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 3.4e-21 105.5 116 45.7
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 1.3e-17 93.6 96 52.1
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 8.9e-14 80.9 88 50.0
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.4e-11 73.6 54 64.8
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 1.1e-06 57.4 43 60.5


User provided reference genes

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