Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 6.6e-246 853.6 433 100.0
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.6e-106 390.6 440 50.2
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 7.7e-101 371.7 436 50.0
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 7.9e-98 361.7 439 47.8
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 3.0e-97 359.8 442 48.2
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 1.1e-96 357.8 441 46.9
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.5e-96 356.7 442 47.1
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 7.4e-96 355.1 446 48.2
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 9.7e-96 354.8 442 49.8
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 3.7e-95 352.8 445 46.5
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 4.8e-95 352.4 452 47.1
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 6.3e-95 352.1 442 47.5
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.1e-94 351.3 441 46.3
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.8e-94 350.5 441 46.3
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 2.9e-92 343.2 437 46.9
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 5.0e-92 342.4 441 45.4
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.4e-91 340.9 437 46.7
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.4e-91 340.9 442 47.7
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 5.5e-91 339.0 440 46.1
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 7.2e-91 338.6 442 45.0
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.6e-90 337.4 444 46.6
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 1.6e-90 337.4 447 45.2
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.6e-90 336.3 401 48.4
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 3.6e-90 336.3 441 44.9
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 4.7e-90 335.9 449 46.8
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 6.1e-90 335.5 443 45.1
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 6.1e-90 335.5 455 45.3
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.8e-89 334.0 449 45.0
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.3e-89 333.6 442 44.6
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 8.8e-89 331.6 443 46.7
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 8.8e-89 331.6 441 46.5
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 2.0e-88 330.5 443 46.7
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.0e-88 330.5 443 46.5
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.6e-88 330.1 441 45.1
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 2.6e-88 330.1 438 47.3
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.7e-87 327.4 442 46.4
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.2e-87 327.0 443 45.8
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 2.8e-87 326.6 365 51.0
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.8e-86 323.9 442 45.0
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 5.3e-86 322.4 441 45.8
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.1e-83 314.7 443 43.3
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 4.2e-83 312.8 361 50.4
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.2e-83 312.8 443 43.1
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 7.2e-83 312.0 443 43.1
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.2e-82 311.2 443 45.4
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 2.7e-82 310.1 439 44.4
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 3.0e-81 306.6 437 44.2
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 3.0e-81 306.6 354 50.6
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 8.8e-81 305.1 440 42.7
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 9.7e-80 301.6 444 42.1
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.7e-79 300.8 441 43.3
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 6.3e-79 298.9 444 41.7
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 2.4e-78 297.0 450 43.6
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 7.0e-78 295.4 448 43.1
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.3e-76 291.2 442 42.3
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.7e-76 290.8 431 42.9
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 8.5e-76 288.5 441 42.2
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.9e-75 287.3 441 42.4
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.9e-75 287.3 440 42.0
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 3.6e-74 283.1 431 42.2
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 6.1e-74 282.3 436 42.2
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.8e-73 280.8 443 42.0
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 2.3e-73 280.4 387 44.2
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 5.2e-73 279.3 462 39.6
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 6.8e-73 278.9 401 44.9
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.6e-72 276.9 443 41.5
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 5.7e-72 275.8 448 41.5
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 9.8e-72 275.0 442 40.7
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 2.2e-71 273.9 380 42.9
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 2.8e-71 273.5 431 39.0
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 3.7e-71 273.1 438 43.8
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 4.8e-71 272.7 449 40.8
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 8.3e-71 271.9 444 41.9
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.4e-70 271.2 443 41.3
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.4e-70 271.2 443 41.1
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.8e-70 270.8 452 42.9
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 2.4e-70 270.4 440 40.5
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 4.1e-70 269.6 450 39.8
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 5.4e-70 269.2 433 40.9
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.2e-69 268.1 325 48.3
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.9e-67 260.8 439 40.8
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.9e-67 260.8 439 40.8
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 7.2e-67 258.8 440 39.3
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 9.4e-67 258.5 446 38.1
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 9.4e-67 258.5 444 38.7
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 6.1e-66 255.8 436 38.8
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.4e-65 254.6 346 43.4
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 2.3e-65 253.8 444 37.4
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 3.0e-65 253.4 438 39.3
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 5.2e-65 252.7 446 38.1
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 8.8e-65 251.9 378 45.2
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 4.9e-63 246.1 449 37.0
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 7.0e-62 242.3 451 41.7
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.0e-60 238.4 438 38.1
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.1e-59 235.0 440 37.7
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 5.5e-59 232.6 384 41.7
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 4.0e-57 226.5 434 37.6
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 5.2e-57 226.1 456 38.2
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 8.9e-57 225.3 194 63.4
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.5e-56 224.6 386 40.7
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 3.7e-55 219.9 435 35.6
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 8.3e-55 218.8 438 34.0
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 8.3e-55 218.8 444 34.7
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.1e-54 218.4 454 35.2
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.0e-52 211.8 445 33.7
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 1.0e-52 211.8 445 33.7
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.3e-52 210.7 449 33.6
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 8.6e-52 208.8 269 46.5
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 4.3e-51 206.5 499 32.9
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 5.6e-51 206.1 447 34.7
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.2e-50 204.9 445 32.8
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.8e-49 201.1 431 34.8
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 5.2e-49 199.5 272 46.7
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.2e-48 198.4 439 33.0
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.9e-47 193.7 365 35.1
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 3.7e-47 193.4 438 32.4
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 4.1e-46 189.9 432 32.6
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 7.0e-46 189.1 448 31.9
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 7.0e-46 189.1 431 36.2
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 9.2e-46 188.7 444 32.4
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.2e-45 188.3 431 35.7
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 6.6e-44 182.6 382 33.5
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.1e-43 181.8 410 31.5
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 7.3e-43 179.1 429 31.5
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 4.4e-40 169.9 373 31.6
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 8.3e-39 165.6 376 31.1
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 1.9e-38 164.5 394 34.0
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 4.1e-38 163.3 303 37.0
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 1.0e-36 158.7 372 32.5
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 6.6e-36 156.0 429 32.2
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 6.8e-33 146.0 168 48.2
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 7.6e-32 142.5 170 46.5
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-28 131.7 207 40.1
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 2.1e-26 124.4 309 30.4
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 3.1e-25 120.6 169 45.0
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.2e-24 118.6 169 45.0
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.0e-24 117.9 204 40.2
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 3.4e-24 117.1 169 44.4
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 3.4e-24 117.1 169 44.4
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 4.4e-24 116.7 162 45.1
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 2.7e-21 107.5 85 67.1
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 4.3e-19 100.1 412 24.5
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.1e-17 95.5 127 49.6
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 3.8e-15 87.0 269 31.2
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.9e-14 84.7 59 76.3
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 6.6e-12 76.3 92 44.6
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 6.6e-12 76.3 92 44.6
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.8e-10 70.9 58 55.2
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-09 68.9 68 51.5
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-09 68.9 68 51.5
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 1.1e-09 68.9 68 51.5
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.4e-09 68.6 79 41.8
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 1.8e-09 68.2 83 43.4
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 1.3e-07 62.0 122 35.2
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 2.9e-07 60.8 110 40.9
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 2.4e-06 57.8 54 48.1
C05p54450 Brassica napus HOM05D021248 ORTHO05D018618 4.2e-06 57.0 62 50.0


User provided reference genes

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