Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 1.8e-308 1062.0 623 100.0
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 4.0e-119 433.0 642 46.6
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 5.8e-118 429.1 640 47.7
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.7e-117 427.6 647 46.2
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 3.4e-110 403.3 647 43.7
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 3.8e-109 399.8 638 43.9
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 7.1e-108 395.6 657 44.0
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 4.3e-105 386.3 684 42.5
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 2.7e-99 367.1 668 39.4
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 4.6e-99 366.3 636 42.5
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 8.7e-98 362.1 672 40.3
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.1e-97 361.7 633 42.2
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 4.3e-97 359.8 327 64.2
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 9.6e-97 358.6 654 41.0
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 5.3e-95 352.8 623 42.4
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 2.6e-94 350.5 659 41.1
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.7e-93 347.8 634 40.9
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.1e-92 345.1 634 40.4
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.5e-92 344.0 644 41.0
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 2.5e-92 344.0 641 39.3
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.2e-92 343.6 667 39.7
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.2e-92 343.2 645 41.2
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.6e-91 340.1 567 40.2
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 7.9e-91 339.0 693 39.5
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 3.9e-90 336.7 642 38.3
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.7e-90 335.9 649 38.8
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.1e-89 335.1 665 39.4
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.7e-89 332.8 644 38.7
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 9.7e-89 332.0 699 35.6
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.1e-87 328.6 632 39.9
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.1e-87 328.6 670 39.9
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.5e-86 324.7 628 38.5
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 2.6e-86 323.9 602 39.5
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 5.9e-86 322.8 625 39.2
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 5.9e-86 322.8 642 39.7
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.8e-85 320.1 251 70.1
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 3.8e-85 320.1 687 38.4
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 5.0e-85 319.7 692 38.3
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 1.4e-84 318.2 308 59.4
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.9e-84 317.8 637 40.5
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.2e-84 317.0 654 39.0
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 4.2e-84 316.6 651 37.6
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 5.5e-84 316.2 629 38.8
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.1e-83 314.3 637 38.1
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 6.1e-83 312.8 647 37.7
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 1.8e-82 311.2 618 38.3
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.3e-82 310.8 660 37.3
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.3e-82 310.8 627 42.1
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.0e-82 310.5 646 39.0
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.1e-82 309.7 625 37.9
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.3e-81 307.0 626 41.7
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 5.7e-81 306.2 633 41.5
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 5.7e-81 306.2 636 37.3
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 7.4e-81 305.8 626 41.9
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 7.4e-81 305.8 638 35.7
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.3e-80 305.1 631 39.3
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 2.2e-80 304.3 670 35.7
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 4.8e-80 303.1 624 38.0
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 8.2e-80 302.4 638 35.9
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 8.2e-80 302.4 688 36.0
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.8e-79 301.2 656 37.0
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.8e-79 301.2 620 37.9
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.8e-79 301.2 629 40.9
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.8e-79 301.2 314 57.0
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 3.1e-79 300.4 635 36.4
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 3.1e-79 300.4 642 40.7
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 3.1e-79 300.4 666 35.4
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.2e-78 298.5 623 37.9
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.0e-78 297.7 632 36.9
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 5.9e-78 296.2 304 57.6
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.0e-77 295.4 296 58.8
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.3e-77 295.0 684 34.9
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.7e-77 294.7 628 39.2
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 5.0e-77 293.1 605 39.2
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 5.5e-76 289.7 627 38.4
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.2e-75 288.5 626 37.1
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.6e-75 288.1 306 55.9
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.8e-74 284.6 693 35.9
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.8e-74 284.6 620 38.4
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 5.2e-74 283.1 692 35.5
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 6.7e-74 282.7 288 57.6
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 1.1e-73 282.0 288 57.6
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.6e-73 280.8 650 34.9
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.3e-73 280.4 633 35.7
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 7.4e-73 279.3 288 56.6
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 7.4e-73 279.3 288 56.6
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 7.4e-73 279.3 673 35.7
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 1.3e-72 278.5 661 34.5
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.7e-72 278.1 629 36.2
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 3.7e-72 276.9 623 37.2
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.1e-71 275.4 294 56.1
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 2.4e-71 274.2 645 35.3
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.2e-70 271.9 623 35.5
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 2.6e-70 270.8 625 37.0
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 5.0e-69 266.5 272 57.7
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.0e-69 266.5 255 58.4
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 5.0e-69 266.5 574 35.7
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 6.5e-69 266.2 621 35.4
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 5.5e-68 263.1 573 38.9
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 7.2e-68 262.7 640 35.0
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 9.4e-68 262.3 274 55.1
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 9.4e-68 262.3 660 34.7
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 9.4e-68 262.3 627 36.8
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.6e-67 260.4 646 33.9
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.8e-66 258.1 651 34.1
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 3.0e-66 257.3 628 37.4
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.0e-66 256.9 545 37.8
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 8.8e-66 255.8 651 38.6
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 3.3e-65 253.8 655 35.1
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 5.7e-65 253.1 314 48.7
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.1e-63 248.8 277 56.0
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.1e-63 248.8 277 56.0
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.8e-63 248.1 288 52.8
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 2.0e-62 244.6 625 35.7
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 3.5e-62 243.8 297 51.5
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 1.3e-61 241.9 621 35.6
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 6.5e-61 239.6 666 32.6
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.9e-60 238.0 268 51.5
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.5e-60 237.7 645 34.6
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.2e-60 236.9 626 37.2
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 1.2e-59 235.3 647 35.2
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 2.1e-59 234.6 643 34.1
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 1.0e-58 232.3 517 37.1
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 4.8e-56 223.4 644 31.8
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 4.8e-56 223.4 635 33.1
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 2.4e-55 221.1 640 33.0
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 2.7e-54 217.6 217 58.5
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 2.7e-54 217.6 631 32.3
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 3.5e-54 217.2 449 38.8
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 4.5e-54 216.9 217 58.1
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 3.8e-53 213.8 628 32.5
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 1.2e-49 202.2 249 49.8
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 4.4e-49 200.3 645 31.3
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.7e-48 198.4 577 30.3
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 5.4e-47 193.4 189 58.7
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.0e-46 191.4 226 45.1
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 3.5e-46 190.7 630 31.0
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.9e-44 184.9 276 41.7
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.0e-42 179.1 448 34.4
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.2e-40 171.4 289 42.9
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.7e-40 170.6 238 47.5
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 8.3e-40 169.5 621 28.8
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.8e-39 168.3 225 41.8
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 1.7e-37 161.8 468 33.1
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.6e-35 155.2 287 39.4
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.8e-35 154.5 215 47.4
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 3.4e-33 147.5 178 52.2
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 5.4e-31 140.2 254 36.2
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.1e-28 132.5 590 27.8
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 3.4e-25 120.9 122 56.6
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.4e-25 120.9 191 41.4
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 3.7e-24 117.5 193 38.3
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 4.9e-24 117.1 231 33.8
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 1.0e-21 109.4 137 50.4
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 1.1e-20 105.9 275 33.5
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.8e-19 101.3 231 35.9
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 6.2e-19 100.1 79 64.6
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.2e-17 95.9 188 37.8
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 7.6e-17 93.2 91 56.0
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 2.4e-15 88.2 98 51.0
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.1e-15 87.4 91 56.0
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 9.2e-15 86.3 57 73.7
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 3.0e-13 81.3 175 36.6
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 5.1e-13 80.5 66 65.2
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.3e-12 77.8 96 47.9
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 9.6e-12 76.3 207 28.5
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.2e-11 75.9 76 59.2
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.6e-11 74.3 67 56.7
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.8e-10 72.0 104 44.2
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 5.2e-10 70.5 53 62.3
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 5.2e-10 70.5 53 62.3
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 6.9e-10 70.1 377 23.1
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.5e-09 68.9 136 39.0
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 1.7e-08 65.5 72 48.6
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 2.2e-08 65.1 56 58.9
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 3.8e-08 64.3 53 54.7
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 4.9e-08 63.9 86 40.7
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 8.4e-08 63.2 53 52.8
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 1.2e-06 59.3 53 49.1
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 1.2e-06 59.3 105 37.1
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.6e-06 58.9 87 47.1


User provided reference genes

Program Settings