Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 4.9e-73 278.1 186 100.0
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 8.0e-31 137.9 184 42.9
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 1.4e-27 127.1 189 50.8
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 8.0e-23 111.3 182 56.0
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 4.0e-22 109.0 180 55.0
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.2e-21 107.5 185 50.3
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 1.5e-21 107.1 188 36.7
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.5e-21 107.1 183 51.4
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 2.6e-21 106.3 183 46.4
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 2.6e-21 106.3 181 42.5
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 7.5e-21 104.8 176 56.2
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 9.8e-21 104.4 178 53.9
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 2.8e-20 102.8 184 43.5
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 3.7e-20 102.4 195 42.1
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 3.7e-20 102.4 183 50.8
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 4.9e-20 102.1 151 49.7
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.1e-19 100.9 180 40.0
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.1e-19 100.9 60 70.0
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.1e-19 100.9 179 31.8
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.4e-19 100.5 179 43.0
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.4e-19 100.5 183 50.3
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 3.1e-19 99.4 181 48.6
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 4.1e-19 99.0 183 50.3
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 9.2e-19 97.8 175 43.4
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.2e-18 97.4 190 37.4
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 3.5e-18 95.9 187 36.4
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.5e-18 95.9 186 47.8
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 4.5e-18 95.5 180 56.1
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.3e-17 94.0 187 41.2
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 1.7e-17 93.6 176 41.5
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 2.3e-17 93.2 184 46.2
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 2.9e-17 92.8 171 48.5
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 5.0e-17 92.0 147 56.5
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 5.0e-17 92.0 185 42.2
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 5.0e-17 92.0 184 41.3
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 6.6e-17 91.7 189 42.3
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 8.6e-17 91.3 175 38.3
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 8.6e-17 91.3 175 38.9
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 1.1e-16 90.9 175 34.9
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.5e-16 90.5 179 35.2
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 1.5e-16 90.5 150 53.3
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.5e-16 90.5 55 63.6
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.9e-16 90.1 187 46.5
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.9e-16 90.1 177 47.5
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 2.5e-16 89.7 177 45.8
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 2.5e-16 89.7 183 52.5
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 2.5e-16 89.7 186 37.6
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 4.3e-16 89.0 181 49.2
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 5.6e-16 88.6 57 61.4
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 5.6e-16 88.6 58 60.3
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 5.6e-16 88.6 186 34.9
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 7.3e-16 88.2 176 48.9
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 7.3e-16 88.2 178 39.9
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 7.3e-16 88.2 178 39.9
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 9.5e-16 87.8 180 46.1
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 1.2e-15 87.4 174 33.9
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.6e-15 87.0 178 54.5
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 1.6e-15 87.0 182 52.7
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.1e-15 86.7 188 34.0
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 2.8e-15 86.3 181 51.4
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 2.8e-15 86.3 146 55.5
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 4.7e-15 85.5 170 41.2
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 4.7e-15 85.5 180 52.8
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 6.1e-15 85.1 169 46.7
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 8.0e-15 84.7 178 41.6
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.0e-14 84.3 143 58.7
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.4e-14 84.0 186 42.5
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.4e-14 84.0 185 43.8
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.3e-14 83.2 147 52.4
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 2.3e-14 83.2 183 38.3
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 2.3e-14 83.2 171 51.5
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.1e-14 82.8 147 52.4
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 3.1e-14 82.8 224 42.9
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 4.0e-14 82.4 53 60.4
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 4.0e-14 82.4 193 35.8
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 4.0e-14 82.4 184 32.1
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 5.2e-14 82.0 151 52.3
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 6.8e-14 81.6 176 42.6
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.8e-14 81.6 181 44.2
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 8.9e-14 81.3 175 48.6
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 1.2e-13 80.9 185 43.2
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 1.2e-13 80.9 176 40.3
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 2.0e-13 80.1 55 61.8
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 2.0e-13 80.1 55 61.8
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 2.0e-13 80.1 55 61.8
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 2.0e-13 80.1 55 61.8
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 3.4e-13 79.3 182 37.4
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 3.4e-13 79.3 52 63.5
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 5.8e-13 78.6 181 31.5
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 7.5e-13 78.2 188 41.5
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 7.5e-13 78.2 188 41.0
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 7.5e-13 78.2 157 34.4
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-12 77.4 182 44.0
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.3e-12 77.4 177 44.6
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 1.3e-12 77.4 151 45.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.7e-12 77.0 55 56.4
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.7e-12 77.0 177 44.6
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.7e-12 77.0 177 44.6
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.7e-12 77.0 187 32.6
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.7e-12 77.0 179 39.7
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 2.2e-12 76.6 58 55.2
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 2.2e-12 76.6 58 55.2
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 2.9e-12 76.3 48 58.3
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 3.7e-12 75.9 55 54.5
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 3.7e-12 75.9 55 54.5
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 3.7e-12 75.9 152 46.1
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 4.9e-12 75.5 153 56.2
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 4.9e-12 75.5 55 52.7
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 4.9e-12 75.5 188 37.2
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 6.4e-12 75.1 58 53.4
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 6.4e-12 75.1 55 54.5
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 6.4e-12 75.1 58 53.4
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 6.4e-12 75.1 55 54.5
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 6.4e-12 75.1 58 53.4
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 6.4e-12 75.1 55 54.5
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 6.4e-12 75.1 155 55.5
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 8.3e-12 74.7 58 51.7
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 8.3e-12 74.7 58 53.4
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 8.3e-12 74.7 185 27.0
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-11 73.9 53 52.8
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 2.4e-11 73.2 154 39.0
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 3.2e-11 72.8 53 50.9
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.2e-11 72.8 53 50.9
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 3.2e-11 72.8 51 58.8
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.1e-11 72.4 53 50.9
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.1e-11 72.4 53 50.9
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.4e-11 72.0 56 48.2
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 5.4e-11 72.0 56 48.2
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 5.4e-11 72.0 56 50.0
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 7.0e-11 71.6 50 52.0
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 9.2e-11 71.2 50 54.0
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 9.2e-11 71.2 52 50.0
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 1.6e-10 70.5 179 38.0
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 2.7e-10 69.7 157 47.1
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.5e-10 69.3 153 45.1
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 3.5e-10 69.3 158 47.5
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 3.5e-10 69.3 192 44.3
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.0e-10 68.6 163 48.5
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 3.9e-09 65.9 45 55.6
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.6e-09 64.7 56 42.9
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.1e-08 64.3 54 44.4
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.5e-08 63.9 45 51.1
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.9e-08 63.5 51 45.1
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 2.5e-08 63.2 45 51.1
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 3.3e-08 62.8 42 57.1
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 3.3e-08 62.8 173 44.5
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.3e-08 62.8 56 44.6
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.3e-08 62.8 56 42.9
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 7.3e-08 61.6 179 39.7
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 9.5e-08 61.2 45 48.9
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 2.8e-07 59.7 45 46.7
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 1.4e-06 57.4 152 34.9
Os09g0309600 Oryza sativa ssp. japonica HOM05D024720 ORTHO05D030308 8.9e-06 54.7 56 37.5


User provided reference genes

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