Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 1.6e-146 522.7 250 100.0
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.2e-111 406.8 250 77.2
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 2.8e-111 405.6 250 78.8
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 4.7e-111 404.8 250 79.2
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 2.9e-108 395.6 253 76.7
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 1.4e-107 393.3 250 74.0
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 1.9e-107 392.9 250 75.2
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 7.0e-107 391.0 250 75.6
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 1.6e-106 389.8 250 75.6
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 1.6e-106 389.8 250 75.2
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 1.3e-105 386.7 251 74.5
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 1.3e-105 386.7 248 73.8
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 3.0e-105 385.6 250 74.4
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 3.0e-105 385.6 250 74.8
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 5.0e-105 384.8 250 74.4
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 1.1e-104 383.6 250 73.6
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 1.1e-104 383.6 250 73.6
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 3.3e-104 382.1 248 74.2
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 3.3e-104 382.1 250 73.6
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 7.3e-104 380.9 250 74.0
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 1.2e-103 380.2 250 73.2
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 8.1e-103 377.5 255 72.2
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 8.1e-103 377.5 250 71.2
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 6.8e-102 374.4 250 71.6
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.5e-101 373.2 250 72.4
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 2.0e-101 372.9 250 73.2
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 1.3e-100 370.2 250 70.0
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 2.2e-100 369.4 251 70.9
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 2.9e-100 369.0 250 71.6
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 3.7e-100 368.6 251 70.5
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 3.2e-99 365.5 249 71.5
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 4.1e-99 365.2 251 70.5
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 6.6e-97 357.8 315 60.6
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 1.5e-96 356.7 226 75.2
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 2.5e-96 355.9 250 68.0
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 5.6e-96 354.8 250 68.0
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 4.7e-95 351.7 248 69.4
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 6.2e-95 351.3 226 74.3
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 8.1e-95 350.9 250 69.2
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 8.1e-95 350.9 251 70.5
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 1.4e-94 350.1 250 68.8
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 6.8e-94 347.8 245 69.0
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 6.8e-94 347.8 250 68.8
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 2.6e-93 345.9 250 67.6
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 4.4e-93 345.1 252 67.1
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 5.8e-93 344.7 247 67.6
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 7.6e-93 344.4 234 69.7
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 2.9e-92 342.4 251 67.3
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 2.9e-92 342.4 251 67.3
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 6.4e-92 341.3 251 65.7
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 1.9e-91 339.7 245 66.9
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 1.6e-90 336.7 250 65.2
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 1.0e-89 334.0 251 63.7
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 1.3e-89 333.6 250 66.4
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 1.7e-89 333.2 250 63.2
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 6.6e-89 331.3 250 62.4
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 6.6e-89 331.3 258 62.0
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 1.1e-88 330.5 251 62.5
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 1.1e-88 330.5 255 62.7
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 1.5e-88 330.1 251 62.2
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.5e-88 330.1 245 66.1
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 2.5e-88 329.3 250 62.4
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 2.5e-88 329.3 246 65.4
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 2.5e-88 329.3 246 65.4
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 2.5e-88 329.3 251 62.5
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 3.3e-88 328.9 252 64.3
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 5.6e-88 328.2 250 64.0
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 9.6e-88 327.4 243 65.4
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 2.8e-87 325.9 251 61.8
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 2.8e-87 325.9 246 65.0
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 3.6e-87 325.5 251 61.4
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 4.7e-87 325.1 257 61.1
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 8.1e-87 324.3 277 57.4
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 1.1e-86 323.9 252 63.9
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 1.4e-86 323.6 261 60.2
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 1.4e-86 323.6 250 64.0
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.4e-86 323.6 222 70.3
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 4.0e-86 322.0 251 61.4
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 9.9e-85 317.4 253 63.6
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 1.3e-84 317.0 250 60.8
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 3.8e-84 315.5 250 61.2
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 1.1e-83 313.9 189 78.3
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 9.3e-83 310.8 301 51.8
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.2e-82 310.5 260 61.9
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 3.5e-82 308.9 226 65.9
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 5.1e-81 305.1 233 62.2
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 6.2e-79 298.1 250 62.4
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 2.0e-77 293.1 200 71.0
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 7.6e-77 291.2 242 58.7
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 1.7e-76 290.0 212 62.7
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 2.4e-75 286.2 187 70.6
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 4.2e-75 285.4 301 53.2
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 2.7e-74 282.7 187 71.1
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 2.5e-72 276.2 199 65.8
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 3.6e-71 272.3 247 53.4
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 4.0e-70 268.9 243 54.3
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 1.2e-69 267.3 245 51.8
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 1.9e-67 260.0 194 61.9
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 1.6e-66 256.9 247 50.6
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 4.9e-60 235.3 207 58.0
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 1.8e-57 226.9 165 66.1
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.3e-55 220.7 152 66.4
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 3.6e-42 176.0 136 71.3
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 9.7e-40 167.9 120 64.2
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 1.1e-38 164.5 254 37.8
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 9.7e-32 141.4 177 43.5
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 2.6e-24 116.7 235 33.2
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 7.5e-24 115.2 210 35.2
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 9.7e-24 114.8 167 40.1
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 4.5e-21 105.9 199 32.7
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 3.8e-20 102.8 209 31.1
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 5.5e-19 99.0 135 40.7
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 7.2e-19 98.6 71 60.6
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 3.0e-17 93.2 165 32.7
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 2.6e-16 90.1 64 70.3
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.5e-11 74.3 66 56.1
COL.COLO4_09126 Corchorus olitorius HOM05D002055 ORTHO05D002120 4.9e-07 59.3 52 57.7


User provided reference genes

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