Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 1.4e-108 396.4 207 100.0
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 3.4e-46 189.1 151 58.9
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 3.7e-45 185.7 153 59.5
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 6.3e-45 184.9 130 66.9
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 6.3e-45 184.9 151 58.3
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 1.8e-44 183.3 108 77.8
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 2.4e-44 183.0 160 58.1
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 4.1e-44 182.2 150 60.0
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 5.4e-44 181.8 150 59.3
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 7.0e-44 181.4 109 77.1
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 1.2e-43 180.6 149 59.7
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 1.2e-43 180.6 133 64.7
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 1.6e-43 180.3 112 75.0
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 1.6e-43 180.3 114 71.1
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 2.0e-43 179.9 110 73.6
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 2.0e-43 179.9 150 63.3
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 2.7e-43 179.5 141 61.7
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 7.8e-43 177.9 114 70.2
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 7.8e-43 177.9 132 64.4
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 2.3e-42 176.4 161 57.1
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 2.9e-42 176.0 138 61.6
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 6.6e-42 174.9 151 60.3
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 1.5e-41 173.7 140 62.9
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 1.5e-41 173.7 140 62.9
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.9e-41 173.3 121 66.9
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 3.3e-41 172.6 104 74.0
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 4.3e-41 172.2 134 61.9
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 5.6e-41 171.8 149 57.0
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 5.6e-41 171.8 131 63.4
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 7.3e-41 171.4 107 73.8
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 7.3e-41 171.4 100 76.0
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 1.2e-40 170.6 100 74.0
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 1.6e-40 170.2 139 61.2
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 1.6e-40 170.2 117 70.1
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 2.1e-40 169.9 152 55.3
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 2.1e-40 169.9 128 61.7
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 2.8e-40 169.5 113 65.5
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 2.8e-40 169.5 112 69.6
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 4.7e-40 168.7 112 69.6
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 4.7e-40 168.7 104 71.2
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 6.1e-40 168.3 112 69.6
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 8.0e-40 167.9 154 58.4
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 1.0e-39 167.5 106 70.8
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 1.0e-39 167.5 149 57.7
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 2.3e-39 166.4 110 68.2
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 3.0e-39 166.0 111 70.3
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 3.0e-39 166.0 111 70.3
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 3.0e-39 166.0 151 57.0
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 3.0e-39 166.0 142 59.9
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 5.2e-39 165.2 152 57.2
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 5.2e-39 165.2 112 68.8
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 1.2e-38 164.1 125 64.0
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 1.2e-38 164.1 112 69.6
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 2.6e-38 162.9 145 57.9
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 3.4e-38 162.5 145 57.9
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 7.5e-38 161.4 157 54.1
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 7.5e-38 161.4 163 52.1
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 9.8e-38 161.0 95 73.7
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 1.3e-37 160.6 153 53.6
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 6.4e-37 158.3 105 65.7
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 1.9e-36 156.8 107 65.4
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 2.4e-36 156.4 105 65.7
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 4.1e-36 155.6 124 58.9
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 7.0e-36 154.8 107 65.4
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 7.0e-36 154.8 153 52.3
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 9.2e-36 154.5 107 64.5
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 9.2e-36 154.5 107 65.4
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 1.6e-35 153.7 137 56.9
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 2.0e-35 153.3 137 56.2
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 2.0e-35 153.3 158 48.1
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 2.0e-35 153.3 107 68.2
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 4.6e-35 152.1 154 50.0
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 4.6e-35 152.1 154 50.0
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 4.6e-35 152.1 154 50.0
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 7.8e-35 151.4 107 67.3
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 1.7e-34 150.2 154 49.4
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 1.7e-34 150.2 154 49.4
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 3.9e-34 149.1 118 58.5
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 7.3e-33 144.8 89 73.0
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 7.3e-33 144.8 89 73.0
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 8.0e-32 141.4 161 48.4
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 8.0e-32 141.4 108 63.0
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 8.0e-32 141.4 140 52.1
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 2.3e-31 139.8 113 55.8
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 4.0e-31 139.0 98 63.3
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 4.0e-31 139.0 125 56.0
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 2.2e-29 133.3 99 60.6
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 2.9e-29 132.9 131 48.9
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 8.3e-29 131.3 94 66.0
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 8.3e-29 131.3 100 60.0
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 3.5e-27 125.9 94 59.6
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 3.5e-27 125.9 152 45.4
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 2.3e-26 123.2 90 65.6
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 5.1e-26 122.1 87 66.7
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 8.6e-26 121.3 111 55.9
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 1.6e-24 117.1 136 47.1
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 4.7e-24 115.5 107 55.1
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05D000358 ORTHO05D009346 2.0e-22 110.2 101 51.5
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 9.9e-22 107.8 74 64.9
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 8.6e-18 94.7 69 62.3
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.8e-15 87.0 64 60.9
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 2.4e-12 76.6 48 77.1
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 5.4e-12 75.5 79 50.6
FAN20G1711 Fragaria x ananassa HOM05D000358 ORTHO05D009346 2.7e-11 73.2 150 34.0
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 2.7e-11 73.2 101 44.6
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 3.9e-10 69.3 159 34.0
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 4.3e-09 65.9 83 41.0


User provided reference genes

Program Settings