Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 1.1e-189 666.4 323 100.0
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.3e-121 440.3 297 70.7
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 2.2e-121 439.5 297 70.7
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 2.7e-119 432.6 297 70.0
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 2.0e-117 426.4 297 69.4
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 4.1e-115 418.7 259 73.7
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.6e-114 416.0 271 72.3
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 5.0e-113 411.8 293 68.3
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.5e-112 409.5 272 69.9
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 2.5e-112 409.5 300 67.0
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.5e-112 409.5 293 68.3
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 5.5e-112 408.3 267 69.7
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.6e-111 406.8 297 66.7
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 2.1e-111 406.4 295 65.1
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 2.7e-111 406.0 310 63.5
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 3.6e-111 405.6 264 70.8
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 4.7e-111 405.2 319 62.7
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 6.1e-111 404.8 295 63.1
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 6.1e-111 404.8 303 65.3
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 6.1e-111 404.8 272 70.2
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.4e-110 403.7 293 67.6
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 2.3e-110 402.9 283 67.1
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 2.3e-110 402.9 295 65.8
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 2.3e-110 402.9 295 64.7
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 3.0e-110 402.5 235 78.7
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 6.7e-110 401.4 305 63.9
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.5e-109 400.2 264 71.2
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 2.0e-109 399.8 264 70.5
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 5.7e-109 398.3 300 66.7
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 9.7e-109 397.5 246 74.0
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.7e-108 396.7 262 70.2
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 1.7e-108 396.7 263 69.2
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 4.8e-108 395.2 303 63.0
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.8e-108 395.2 307 61.6
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 4.8e-108 395.2 299 64.5
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 8.2e-108 394.4 304 61.8
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.1e-107 394.0 316 59.8
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.1e-107 394.0 285 64.6
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 1.8e-107 393.3 267 66.7
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 2.4e-107 392.9 325 60.9
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 3.1e-107 392.5 304 61.5
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 3.1e-107 392.5 294 65.3
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 5.3e-107 391.7 261 68.2
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.6e-106 389.4 297 64.6
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 4.5e-106 388.7 249 69.1
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 5.9e-106 388.3 254 72.0
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 1.0e-105 387.5 260 68.5
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.7e-105 386.7 240 74.2
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 3.8e-105 385.6 247 71.3
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 3.8e-105 385.6 266 65.4
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 1.5e-104 383.6 245 71.4
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 1.9e-104 383.3 243 71.2
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 2.5e-104 382.9 246 69.1
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.5e-104 382.9 245 71.0
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 5.5e-104 381.7 231 74.0
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 5.5e-104 381.7 231 74.0
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 7.2e-104 381.3 245 71.0
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 7.2e-104 381.3 245 71.0
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 3.6e-103 379.0 231 74.5
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 3.6e-103 379.0 307 63.2
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.3e-102 376.3 230 76.5
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 5.2e-102 375.2 296 62.5
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 3.7e-100 369.0 244 66.8
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 6.3e-100 368.2 297 59.9
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 8.2e-100 367.9 252 68.3
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.8e-99 366.7 255 65.9
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 9.1e-99 364.4 298 59.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.1e-99 364.4 252 67.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.1e-99 364.4 252 67.9
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 1.2e-98 364.0 335 52.8
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 1.6e-98 363.6 258 64.0
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 2.7e-98 362.8 263 65.0
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 4.5e-98 362.1 263 62.7
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 1.3e-97 360.5 248 64.9
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 2.2e-97 359.8 252 65.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 5.0e-97 358.6 271 61.6
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 2.3e-94 349.7 295 57.6
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 3.0e-94 349.4 247 64.8
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 8.8e-94 347.8 267 60.7
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 1.5e-93 347.1 295 57.3
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.8e-92 342.8 247 64.0
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.7e-92 342.4 299 58.9
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 2.4e-91 339.7 253 63.6
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 3.1e-91 339.3 231 68.0
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 7.0e-91 338.2 267 58.1
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 2.0e-90 336.7 253 63.2
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.3e-89 334.0 227 69.2
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 2.9e-89 332.8 263 58.9
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.8e-86 323.6 246 62.2
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 4.3e-80 302.4 264 56.1
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.8e-78 297.0 270 54.4
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 5.2e-78 295.4 309 51.5
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 3.3e-72 276.2 261 55.2
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 3.3e-72 276.2 253 52.6
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 1.2e-71 274.2 192 66.1
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 6.8e-70 268.5 254 53.1
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 4.4e-69 265.8 252 53.2
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 2.2e-68 263.5 212 59.0
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 1.6e-66 257.3 218 58.3
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.5e-64 250.8 151 74.2
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.2e-61 241.1 168 61.9
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 1.5e-61 240.7 177 66.1
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 5.8e-53 212.2 173 59.0
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 4.1e-51 206.1 285 41.4
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 6.4e-44 182.2 244 42.6
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 9.3e-43 178.3 155 61.3
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 4.3e-40 169.5 246 39.8
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 9.0e-38 161.8 172 49.4
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 1.1e-35 154.8 128 58.6
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.3e-31 141.4 99 66.7
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 1.6e-31 141.0 165 44.2
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 9.9e-29 131.7 98 63.3
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 3.8e-28 129.8 121 52.1
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 9.3e-27 125.2 94 63.8
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 1.3e-25 121.3 178 39.9
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 7.4e-24 115.5 150 42.0
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.4e-22 111.3 125 46.4
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 5.3e-22 109.4 121 47.9
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.3e-20 104.8 66 71.2
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 3.5e-18 96.7 138 39.1
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.3e-17 94.7 57 73.7
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 6.7e-17 92.4 140 40.0
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 9.0e-14 82.0 202 31.2
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 5.0e-12 76.3 116 38.8
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 4.6e-10 69.7 117 37.6
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 2.3e-09 67.4 56 48.2
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 3.0e-09 67.0 119 34.5
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 3.9e-09 66.6 94 41.5
ECA246G0314 Erigeron canadensis HOM05D001287 ORTHO05D001226 3.3e-08 63.5 218 24.3
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.3e-07 61.6 41 63.4
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 4.8e-07 59.7 55 58.2
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 1.8e-06 57.8 53 52.8


User provided reference genes

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