Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.2e-261 905.2 497 100.0
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 6.6e-181 637.9 497 65.6
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 7.5e-177 624.4 500 65.4
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.7e-176 622.1 497 65.6
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.5e-172 610.1 506 64.2
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.6e-171 605.5 497 65.0
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 3.6e-171 605.5 506 63.4
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.2e-170 601.7 497 63.4
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 6.8e-170 601.3 497 64.4
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 6.8e-170 601.3 503 63.4
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 3.4e-169 599.0 499 62.9
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 4.4e-169 598.6 497 64.4
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 9.8e-169 597.4 497 63.0
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 8.3e-168 594.3 497 63.2
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 4.1e-167 592.0 512 61.5
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 2.3e-165 586.3 497 63.0
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 8.6e-165 584.3 545 62.6
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 7.3e-164 581.3 497 63.8
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 7.3e-164 581.3 497 63.8
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.6e-163 580.1 497 63.8
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.4e-162 577.0 479 63.5
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.4e-162 577.0 500 61.2
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.8e-162 576.6 498 61.2
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 5.2e-162 575.1 497 62.4
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 8.9e-162 574.3 503 61.2
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.5e-161 573.5 506 61.9
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 2.0e-161 573.2 498 61.8
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 4.4e-161 572.0 499 60.5
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.9e-160 568.5 500 60.4
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.9e-160 568.5 492 61.6
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.1e-159 567.4 497 61.0
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 1.6e-158 563.5 498 60.8
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.5e-158 562.4 497 60.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 4.6e-158 562.0 469 62.7
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 2.3e-157 559.7 497 60.6
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 5.6e-156 555.1 497 59.2
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 7.3e-156 554.7 498 61.0
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.2e-155 553.9 497 59.0
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.2e-155 553.9 497 58.8
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.8e-155 552.7 500 60.6
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 6.2e-155 551.6 498 59.8
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.8e-154 550.1 497 58.1
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 2.4e-154 549.7 498 60.6
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 8.9e-154 547.7 497 58.4
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 4.4e-153 545.4 498 59.2
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.4e-152 541.6 499 57.9
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.9e-151 540.0 503 62.0
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.5e-150 535.8 425 64.7
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 3.5e-150 535.8 499 59.1
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 6.0e-150 535.0 499 57.9
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.3e-149 533.9 435 64.8
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 6.6e-149 531.6 497 57.3
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 8.7e-149 531.2 502 59.4
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 2.5e-148 529.6 518 55.6
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.3e-148 529.3 497 57.5
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 4.3e-148 528.9 498 58.0
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.3e-147 527.3 497 57.5
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.6e-147 525.8 498 57.2
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.1e-146 524.2 498 58.8
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 4.0e-146 522.3 474 59.7
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.2e-145 520.8 413 64.9
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 4.5e-145 518.8 497 56.5
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 7.6e-145 518.1 497 57.5
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 4.2e-143 512.3 500 59.6
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.2e-143 512.3 455 60.0
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 5.4e-143 511.9 500 56.0
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 9.3e-143 511.1 513 55.6
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.7e-142 509.6 497 55.9
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.7e-142 509.6 490 55.5
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.7e-141 506.9 502 55.0
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 2.3e-141 506.5 497 54.9
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 5.1e-141 505.4 448 59.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 5.1e-141 505.4 498 55.8
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 6.6e-141 505.0 497 55.3
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.4e-140 501.5 528 53.4
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.8e-139 499.6 514 54.1
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.6e-139 499.2 483 55.1
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.1e-138 496.1 520 52.7
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.1e-138 496.1 453 58.9
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 4.5e-137 492.3 500 54.4
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 2.9e-136 489.6 453 57.2
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 8.4e-136 488.0 499 53.9
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.4e-135 487.3 497 57.1
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 4.2e-135 485.7 499 58.1
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.2e-135 485.7 497 60.0
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 7.1e-135 485.0 515 54.0
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 2.7e-134 483.0 466 56.7
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 3.5e-134 482.6 503 53.9
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 3.5e-134 482.6 497 52.7
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 4.6e-134 482.3 496 53.6
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 8.7e-133 478.0 497 52.9
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 2.5e-132 476.5 504 53.8
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 9.6e-132 474.6 498 53.0
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 9.6e-132 474.6 500 52.6
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.3e-131 474.2 503 53.5
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.3e-131 474.2 500 53.6
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-131 474.2 475 54.1
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.3e-131 474.2 432 61.1
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.7e-131 472.6 503 52.3
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 4.8e-131 472.2 467 56.3
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.1e-130 471.1 499 51.5
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-130 471.1 498 53.2
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.1e-130 471.1 500 52.2
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.4e-130 470.7 471 55.8
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.6e-129 466.5 500 52.0
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 4.9e-128 462.2 586 46.8
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 7.1e-127 458.4 497 52.3
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.1e-126 456.8 499 50.7
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 2.1e-126 456.8 501 52.7
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 6.0e-126 455.3 504 51.0
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.3e-125 454.1 500 51.2
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.9e-124 450.3 490 51.2
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 4.3e-124 449.1 500 50.6
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 9.6e-124 448.0 500 50.6
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 6.9e-122 441.8 455 52.1
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 3.4e-121 439.5 497 50.1
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 2.9e-120 436.4 530 48.7
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 3.8e-120 436.0 500 48.4
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.4e-119 434.1 469 56.3
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.8e-117 427.2 494 50.2
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 5.7e-116 422.2 412 54.1
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.3e-115 421.0 494 55.9
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.8e-115 419.9 545 46.2
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.2e-115 418.3 545 46.1
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.1e-114 417.9 461 56.2
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.3e-114 415.6 397 53.4
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.7e-112 410.6 505 48.5
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.5e-111 406.8 497 46.9
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 8.8e-109 398.3 497 47.9
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.1e-108 397.9 396 55.6
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.0e-108 397.1 499 48.9
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.2e-105 387.9 497 46.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.3e-104 384.4 497 50.9
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.1e-103 381.3 483 48.2
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.8e-98 364.0 216 79.6
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 3.8e-96 356.3 353 52.4
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.8e-91 340.1 216 73.1
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 4.8e-91 339.3 457 40.7
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-87 328.2 421 48.2
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.5e-87 327.0 455 42.9
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.6e-86 324.3 309 50.5
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.8e-85 320.9 222 65.8
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.3e-83 312.0 425 44.2
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 4.1e-82 309.7 358 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 2.0e-81 307.4 312 50.6
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.0e-80 305.1 344 45.9
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 2.9e-67 260.4 176 71.6
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.3e-55 219.9 156 70.5
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.7e-49 200.7 135 68.1
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.5e-39 167.5 247 36.8
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.2e-38 165.2 241 42.3
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 5.2e-37 159.8 244 34.4
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 2.9e-35 154.1 178 49.4
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 2.1e-33 147.9 328 36.3
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 2.7e-33 147.5 190 38.4
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 3.0e-32 144.1 281 36.3
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 6.2e-30 136.3 93 65.6
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 5.4e-26 123.2 76 73.7
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 7.1e-26 122.9 114 62.3
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.1e-22 111.3 70 70.0
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.4e-18 98.6 118 53.4
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 1.8e-16 91.7 60 68.3
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 6.7e-16 89.7 235 26.0
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.0e-13 80.5 97 49.5
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 6.5e-11 73.2 43 79.1
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.9e-10 71.6 78 52.6
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 1.1e-07 62.4 111 36.0


User provided reference genes

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