Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 3.8e-235 817.8 407 100.0
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 2.6e-111 406.4 451 47.7
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 7.2e-109 398.3 451 47.9
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 2.0e-106 390.2 456 46.5
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 2.0e-103 380.2 457 46.0
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 4.5e-103 379.0 459 46.8
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 9.4e-101 371.3 415 47.2
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 1.6e-100 370.5 445 44.3
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 8.0e-100 368.2 457 44.4
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 6.7e-99 365.2 463 44.9
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 1.5e-98 364.0 458 45.2
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 2.0e-98 363.6 466 43.1
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 3.3e-98 362.8 453 44.6
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 7.4e-98 361.7 488 41.8
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 2.2e-97 360.1 459 44.4
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 3.7e-97 359.4 454 43.8
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 4.8e-97 359.0 460 44.6
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 1.4e-96 357.5 436 45.2
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 1.8e-96 357.1 449 44.8
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 1.8e-96 357.1 445 44.7
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 2.4e-96 356.7 438 44.5
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 2.0e-95 353.6 473 41.4
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 4.5e-95 352.4 478 42.3
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 7.7e-95 351.7 439 45.3
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 1.2e-92 344.4 445 41.3
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 1.0e-91 341.3 457 42.9
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 3.0e-91 339.7 460 41.7
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 6.7e-91 338.6 491 40.9
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 2.0e-90 337.0 446 40.1
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 8.3e-89 331.6 439 42.8
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.1e-88 331.3 429 42.2
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 4.5e-87 325.9 429 42.0
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 4.5e-87 325.9 427 43.6
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 1.1e-85 321.2 444 39.6
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 1.9e-85 320.5 472 39.8
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 5.7e-82 308.9 426 39.9
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.7e-81 307.4 422 40.8
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 1.7e-81 307.4 465 40.0
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 1.0e-78 298.1 426 40.4
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 1.0e-78 298.1 432 41.0
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 2.3e-78 297.0 407 42.8
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 2.9e-78 296.6 430 38.8
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 6.6e-78 295.4 422 38.9
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 6.6e-78 295.4 422 38.9
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 6.6e-78 295.4 458 40.0
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 1.9e-77 293.9 428 39.5
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 3.3e-77 293.1 422 39.3
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 3.3e-77 293.1 410 40.2
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 3.3e-77 293.1 446 40.6
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 4.2e-77 292.7 422 39.3
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.2e-76 291.2 363 45.7
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.2e-76 291.2 373 44.8
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 1.7e-73 280.8 435 39.1
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 5.4e-72 275.8 370 42.7
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 2.9e-70 270.0 400 40.0
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 8.0e-68 261.9 435 35.6
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 2.4e-64 250.4 450 32.9
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 1.9e-61 240.7 453 34.4
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 4.3e-61 239.6 380 37.4
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 1.2e-60 238.0 448 33.9
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 2.1e-60 237.3 274 49.3
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 8.0e-60 235.3 370 36.8
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 8.0e-60 235.3 370 36.2
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 1.5e-58 231.1 307 41.0
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 1.1e-56 224.9 454 33.3
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 1.2e-55 221.5 430 34.0
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 1.0e-54 218.4 363 36.1
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 3.9e-46 189.9 249 43.0
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 8.6e-46 188.7 202 47.5
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 2.5e-45 187.2 228 44.7
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 2.6e-34 150.6 214 41.1
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 3.2e-32 143.7 215 36.7
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 9.0e-27 125.6 293 30.7
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 3.8e-25 120.2 89 61.8
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 7.1e-24 115.9 356 29.2
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 2.1e-20 104.4 428 24.8
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 1.5e-18 98.2 55 72.7
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 1.0e-17 95.5 256 28.5
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.7e-15 87.4 53 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 1.0e-14 85.5 458 21.8
Gohir.D11G218200 Gossypium hirsutum HOM05D007808 ORTHO05D009895 1.4e-08 65.1 129 32.6
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 3.5e-07 60.5 39 64.1


User provided reference genes

Program Settings