Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 7.0e-164 580.9 364 100.0
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 7.0e-47 192.2 287 48.8
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 5.9e-46 189.1 287 47.7
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 7.7e-46 188.7 292 49.3
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 2.8e-40 170.2 306 45.1
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 3.7e-40 169.9 277 46.6
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.4e-39 167.9 283 44.9
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 1.8e-39 167.5 261 46.7
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 1.0e-37 161.8 300 43.7
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 2.3e-37 160.6 289 41.9
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 2.5e-36 157.1 300 43.7
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 1.2e-33 148.3 281 39.1
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 1.2e-33 148.3 305 40.3
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 4.4e-33 146.4 297 39.4
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 1.4e-31 141.4 308 39.3
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 2.4e-31 140.6 299 41.1
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 3.2e-31 140.2 301 38.2
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 4.1e-31 139.8 279 41.6
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 7.0e-31 139.0 280 41.1
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 1.2e-30 138.3 292 38.4
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.6e-30 137.9 288 43.4
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 1.6e-30 137.9 280 39.3
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 3.5e-30 136.7 300 41.0
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 7.8e-30 135.6 305 39.7
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 1.3e-29 134.8 301 37.5
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 1.7e-29 134.4 282 42.2
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 2.9e-29 133.7 288 39.6
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 6.6e-29 132.5 294 40.1
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 8.6e-29 132.1 293 38.2
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 1.1e-28 131.7 297 42.1
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.9e-28 131.0 280 41.8
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 2.5e-28 130.6 277 40.1
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 3.3e-28 130.2 300 41.0
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 1.2e-27 128.3 294 37.8
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 2.1e-27 127.5 281 37.7
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 2.8e-27 127.1 282 39.0
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.8e-27 127.1 311 37.9
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 4.7e-27 126.3 306 37.9
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 4.7e-27 126.3 313 35.8
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 2.3e-26 124.0 274 39.4
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 4.0e-26 123.2 294 37.8
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 5.2e-26 122.9 281 38.1
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 5.2e-26 122.9 299 35.8
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 5.2e-26 122.9 283 38.9
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 6.8e-26 122.5 284 39.4
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 6.8e-26 122.5 285 40.0
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 6.8e-26 122.5 295 36.3
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 1.5e-25 121.3 282 37.9
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 2.0e-25 120.9 173 46.2
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 3.4e-25 120.2 296 36.5
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 3.4e-25 120.2 276 38.0
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 4.4e-25 119.8 279 39.1
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 5.8e-25 119.4 290 37.6
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 1.7e-24 117.9 305 35.4
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 1.7e-24 117.9 272 38.6
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 8.3e-24 115.5 270 40.0
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 1.1e-23 115.2 284 37.3
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 3.2e-23 113.6 216 43.1
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 4.1e-23 113.2 286 37.4
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 4.1e-23 113.2 288 35.8
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 4.1e-23 113.2 294 36.7
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 1.2e-22 111.7 281 37.4
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 1.6e-22 111.3 294 36.4
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.6e-22 111.3 294 36.4
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 2.0e-22 110.9 292 37.0
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 1.3e-21 108.2 297 37.4
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.0e-21 107.1 294 35.4
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 3.0e-21 107.1 275 36.4
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 3.0e-21 107.1 278 34.9
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 6.6e-21 105.9 281 37.4
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 3.3e-20 103.6 304 35.2
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 4.3e-20 103.2 316 33.2
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 7.3e-20 102.4 86 64.0
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.1e-19 100.9 292 35.6
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 3.6e-19 100.1 274 34.7
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 1.4e-18 98.2 303 35.0
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 5.8e-17 92.8 292 31.2
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.9e-16 90.5 279 34.1
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.6e-14 84.7 108 50.0
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 6.0e-14 82.8 84 56.0
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 1.3e-13 81.6 290 32.4
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 2.3e-13 80.9 160 40.0
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 3.0e-13 80.5 298 32.2
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 6.6e-13 79.3 300 31.3
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.1e-12 78.6 291 33.3
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 4.3e-12 76.6 301 32.9
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 7.3e-12 75.9 303 30.4
MSTRG.21461 Avicennia marina HOM05D007706 ORTHO05D009593 9.5e-12 75.5 79 58.2
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 9.5e-12 75.5 309 32.0
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.2e-11 75.1 206 33.5
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 2.1e-11 74.3 292 31.8
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 2.1e-11 74.3 304 32.6
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 3.6e-11 73.6 293 32.4
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 4.7e-11 73.2 293 31.1
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.1e-10 72.0 303 30.7
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.8e-10 71.2 304 31.9
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 1.8e-10 71.2 301 30.6
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 3.1e-10 70.5 294 31.6
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 6.8e-10 69.3 327 31.2
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.4e-09 66.6 146 35.6
TAR622G1049 Trochodendron aralioides HOM05D027966 ORTHO05D025782 5.8e-09 66.2 203 30.5
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 9.9e-09 65.5 299 30.1
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 1.3e-08 65.1 282 31.2
SalBow7G0697 Salvia bowleyana HOM05D007706 ORTHO05D009593 2.2e-08 64.3 210 33.8
Actinidia30125 Actinidia chinensis HOM05D007706 ORTHO05D009593 3.7e-08 63.5 62 58.1
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 8.4e-08 62.4 216 32.4
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 7.1e-07 59.3 294 28.9
Mapoly0003s0253 Marchantia polymorpha HOM05D036240 ORTHO05D031199 7.1e-07 59.3 62 54.8
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 9.2e-07 58.9 41 65.9
Actinidia30127 Actinidia chinensis HOM05D007706 ORTHO05D009593 1.2e-06 58.5 84 48.8
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.2e-06 58.5 291 29.9
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 3.5e-06 57.0 84 42.9
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 4.6e-06 56.6 48 54.2
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 7.8e-06 55.8 295 30.2


User provided reference genes

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