Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 3.0e-96 355.1 178 100.0
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.3e-67 260.0 181 73.5
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 5.1e-67 258.1 182 73.1
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.1e-66 256.9 181 72.4
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 1.5e-66 256.5 181 71.8
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 3.3e-66 255.4 182 72.0
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 1.2e-65 253.4 183 72.7
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 2.1e-65 252.7 184 72.3
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 6.2e-65 251.1 182 72.0
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 8.1e-65 250.8 184 71.7
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 8.1e-65 250.8 182 73.1
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 1.1e-64 250.4 184 71.7
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 1.1e-64 250.4 182 72.0
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 1.4e-64 250.0 182 73.1
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 4.0e-64 248.4 182 72.5
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 2.0e-63 246.1 182 71.4
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 2.0e-63 246.1 184 69.6
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 2.6e-63 245.7 183 68.9
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 3.4e-63 245.4 182 71.4
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 3.4e-63 245.4 182 68.7
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 9.9e-63 243.8 184 70.1
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 6.4e-62 241.1 183 67.2
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 6.4e-62 241.1 184 68.5
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 8.4e-62 240.7 148 81.8
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 8.4e-62 240.7 182 70.3
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 8.4e-62 240.7 183 68.9
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.1e-61 240.4 184 68.5
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 1.1e-61 240.4 184 69.6
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 1.1e-61 240.4 183 68.9
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 1.1e-61 240.4 184 69.6
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 1.4e-61 240.0 181 67.4
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 1.9e-61 239.6 182 68.7
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 1.9e-61 239.6 186 71.0
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 2.4e-61 239.2 184 69.6
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 2.4e-61 239.2 183 70.5
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 3.2e-61 238.8 184 70.7
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 4.2e-61 238.4 182 70.9
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 4.2e-61 238.4 181 69.6
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 5.4e-61 238.0 183 67.2
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 7.1e-61 237.7 182 67.0
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 7.1e-61 237.7 148 80.4
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 1.6e-60 236.5 187 68.4
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.6e-60 236.5 183 70.5
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 1.6e-60 236.5 181 68.5
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 1.6e-60 236.5 182 69.8
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 2.7e-60 235.7 183 71.0
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 2.7e-60 235.7 183 71.0
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 2.7e-60 235.7 181 68.0
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 3.5e-60 235.3 184 66.8
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 6.0e-60 234.6 165 72.7
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 6.0e-60 234.6 183 67.8
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 7.8e-60 234.2 183 69.9
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 7.8e-60 234.2 181 68.5
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 1.0e-59 233.8 186 67.7
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 2.3e-59 232.6 158 75.3
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 2.3e-59 232.6 182 65.9
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 6.6e-59 231.1 181 68.5
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 6.6e-59 231.1 181 66.3
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 6.6e-59 231.1 182 67.0
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 1.5e-58 229.9 182 65.9
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 1.5e-58 229.9 186 65.6
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 1.9e-58 229.6 181 65.2
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 3.3e-58 228.8 182 66.5
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 3.3e-58 228.8 147 76.9
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 4.3e-58 228.4 181 65.7
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 9.6e-58 227.3 183 65.6
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 2.8e-57 225.7 185 64.9
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 8.1e-57 224.2 180 64.4
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 1.4e-56 223.4 182 64.3
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 1.4e-56 223.4 182 64.3
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 1.8e-56 223.0 186 63.4
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 1.8e-56 223.0 188 62.8
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 3.1e-56 222.2 183 66.7
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 5.3e-56 221.5 174 66.1
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 9.0e-56 220.7 180 62.8
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 2.6e-55 219.2 181 64.1
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 3.4e-55 218.8 146 73.3
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 4.5e-55 218.4 144 72.2
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 5.8e-55 218.0 182 58.8
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 7.6e-55 217.6 150 72.7
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 9.9e-55 217.2 174 63.2
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 9.9e-55 217.2 184 58.2
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 9.9e-55 217.2 184 58.2
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 1.7e-54 216.5 184 58.2
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 1.7e-54 216.5 114 90.4
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 2.2e-54 216.1 183 57.9
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 2.2e-54 216.1 149 73.2
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 3.8e-54 215.3 116 88.8
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 4.9e-54 214.9 183 59.0
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 4.9e-54 214.9 179 58.7
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 4.9e-54 214.9 116 89.7
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 3.2e-53 212.2 173 59.0
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 4.2e-53 211.8 187 58.3
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 5.4e-53 211.5 183 56.8
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 9.3e-53 210.7 182 57.7
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 9.3e-53 210.7 118 84.7
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 1.2e-52 210.3 200 54.5
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 1.2e-52 210.3 166 66.3
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 2.1e-52 209.5 172 64.5
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 2.1e-52 209.5 182 56.6
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 2.7e-52 209.1 133 77.4
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 3.5e-52 208.8 174 66.1
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 6.0e-52 208.0 184 57.1
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 6.0e-52 208.0 184 57.1
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 6.0e-52 208.0 185 60.0
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 2.3e-51 206.1 115 86.1
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 2.3e-51 206.1 182 61.0
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 1.1e-50 203.8 115 82.6
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 2.5e-50 202.6 187 61.0
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 1.3e-49 200.3 166 65.1
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 4.8e-49 198.4 176 55.1
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 5.8e-47 191.4 165 58.2
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 1.6e-41 173.3 182 55.5
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 3.7e-41 172.2 154 53.9
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 4.8e-41 171.8 115 70.4
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 6.2e-41 171.4 109 71.6
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 1.3e-38 163.7 124 58.9
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 3.9e-35 152.1 123 62.6
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 1.1e-34 150.6 113 59.3
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 2.5e-34 149.4 110 60.0
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 2.2e-33 146.4 109 60.6
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 1.8e-32 143.3 106 58.5
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 3.3e-26 122.5 152 50.7
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 4.5e-23 112.1 59 86.4
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 4.5e-23 112.1 59 86.4
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 2.0e-18 96.7 79 63.3
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 3.3e-18 95.9 104 58.7
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 1.5e-15 87.0 54 75.9
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 5.9e-15 85.1 108 49.1


User provided reference genes

Program Settings