Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 1.2e-195 686.4 364 100.0
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 2.6e-118 429.5 352 65.6
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 5.8e-118 428.3 375 60.3
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 1.7e-114 416.8 362 62.2
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 1.1e-113 414.1 368 61.1
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 9.6e-113 411.0 362 61.3
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 2.4e-111 406.4 365 59.7
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 5.3e-111 405.2 383 56.4
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 9.0e-111 404.4 368 60.1
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 2.6e-110 402.9 363 59.0
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 4.4e-110 402.1 363 59.5
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 7.6e-110 401.4 371 56.9
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 1.7e-109 400.2 363 57.9
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 8.4e-109 397.9 363 57.3
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 8.4e-109 397.9 380 56.3
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 8.4e-109 397.9 362 58.6
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.9e-108 396.7 362 58.6
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 7.1e-108 394.8 363 57.6
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 9.3e-108 394.4 363 57.6
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 2.7e-107 392.9 362 59.7
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 6.6e-106 388.3 341 61.9
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 1.9e-105 386.7 363 56.5
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 1.3e-104 384.0 362 56.4
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 2.8e-104 382.9 363 56.2
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 4.8e-104 382.1 355 56.6
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 8.1e-104 381.3 372 56.5
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 8.1e-104 381.3 363 57.9
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 1.8e-103 380.2 357 57.4
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 3.1e-103 379.4 363 56.5
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 4.0e-103 379.0 364 57.1
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 6.9e-103 378.3 369 55.6
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 9.0e-103 377.9 364 56.0
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 1.2e-102 377.5 377 54.6
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 2.6e-102 376.3 362 56.6
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 3.4e-102 375.9 362 56.4
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 1.3e-101 374.0 357 55.2
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 1.7e-101 373.6 363 54.3
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 8.4e-101 371.3 363 54.5
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 1.1e-100 370.9 363 54.8
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 2.4e-100 369.8 363 56.5
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.4e-100 369.8 364 54.9
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 5.4e-100 368.6 359 56.5
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 2.1e-99 366.7 352 56.8
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 3.5e-99 365.9 363 55.6
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 3.5e-99 365.9 315 63.2
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 4.6e-99 365.5 363 53.7
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 1.3e-98 364.0 363 55.6
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 2.3e-98 363.2 363 54.5
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 3.9e-98 362.5 363 56.2
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 3.9e-98 362.5 365 54.5
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 6.7e-98 361.7 363 55.1
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 8.7e-98 361.3 351 55.0
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 8.7e-98 361.3 363 52.9
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 1.5e-97 360.5 370 54.1
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 4.3e-97 359.0 384 51.8
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 5.6e-97 358.6 366 54.1
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 5.6e-97 358.6 363 54.5
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 1.3e-96 357.5 364 55.5
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 2.1e-96 356.7 359 54.6
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 2.1e-96 356.7 378 52.4
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 3.7e-96 355.9 365 53.7
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 4.8e-96 355.5 359 54.9
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 6.2e-96 355.1 336 57.4
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 8.1e-96 354.8 366 53.8
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 8.1e-96 354.8 389 51.2
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 2.4e-95 353.2 363 53.2
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 2.4e-95 353.2 363 54.3
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 2.4e-95 353.2 361 54.3
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 5.8e-94 348.6 334 55.7
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 7.6e-94 348.2 363 52.9
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 1.7e-93 347.1 363 52.1
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 1.1e-92 344.4 343 55.4
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 2.5e-92 343.2 363 51.5
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 5.5e-92 342.0 339 55.5
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 7.1e-92 341.7 362 50.0
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 2.1e-91 340.1 367 51.8
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 6.0e-91 338.6 397 51.4
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.3e-88 330.9 373 49.9
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 4.8e-88 328.9 355 53.5
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 2.0e-86 323.6 351 51.3
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 6.5e-85 318.5 376 48.7
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.5e-84 316.6 363 46.6
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 1.2e-83 314.3 424 45.5
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 2.1e-83 313.5 352 49.4
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 6.7e-82 308.5 374 45.5
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 4.3e-81 305.8 350 49.1
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 6.3e-80 302.0 394 45.2
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 2.7e-75 286.6 297 54.2
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 3.7e-72 276.2 193 75.1
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 4.5e-70 269.2 193 73.1
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 2.2e-69 266.9 330 47.3
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 5.0e-69 265.8 193 70.5
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 2.3e-66 256.9 198 65.7
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 2.3e-66 256.9 198 66.2
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 6.7e-66 255.4 198 66.2
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 8.8e-66 255.0 198 66.7
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 9.7e-65 251.5 363 40.2
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 8.2e-64 248.4 367 40.1
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 1.8e-63 247.3 198 65.2
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 1.0e-58 231.5 301 42.2
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 9.7e-57 224.9 198 59.6
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 1.3e-56 224.6 350 41.4
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 1.2e-54 218.0 252 50.8
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.0e-42 178.3 352 34.9
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 1.8e-39 167.5 126 62.7
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 5.0e-37 159.5 308 35.1
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 6.6e-37 159.1 105 75.2
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 8.6e-37 158.7 128 60.9
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 2.1e-35 154.1 126 56.3
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 8.0e-35 152.1 249 37.3
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 2.0e-33 147.5 126 57.9
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 5.9e-30 136.0 159 51.6
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 1.9e-28 131.0 90 72.2
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 4.0e-26 123.2 370 30.0
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 4.4e-25 119.8 368 28.0
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 2.2e-24 117.5 343 26.5
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.1e-18 98.6 187 35.3
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 8.9e-18 95.5 99 46.5
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 2.6e-17 94.0 94 51.1
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 3.7e-16 90.1 110 43.6
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 3.0e-13 80.5 93 45.2
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.2e-11 75.1 49 63.3
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 2.6e-09 67.4 99 36.4
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 3.4e-09 67.0 144 33.3
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 4.4e-09 66.6 172 34.3
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 9.9e-09 65.5 151 31.1
FAN06G1813 Fragaria x ananassa HOM05D001916 ORTHO05D003272 1.1e-07 62.0 131 33.6
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 1.1e-07 62.0 164 29.3
THA.LOC104814751 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 1.4e-07 61.6 133 32.3
Medtr2g078020 Medicago truncatula HOM05D000868 ORTHO05D000711 1.9e-07 61.2 113 38.1
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 1.9e-07 61.2 131 35.1
Eucgr.D01807 Eucalyptus grandis HOM05D001916 ORTHO05D003272 2.4e-07 60.8 85 40.0
FvH4_7g30490 Fragaria vesca HOM05D001916 ORTHO05D003272 2.4e-07 60.8 128 32.8
FAN06G4606 Fragaria x ananassa HOM05D001916 ORTHO05D003272 3.2e-07 60.5 128 32.8
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 5.4e-07 59.7 167 32.3
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 5.4e-07 59.7 152 30.3
Manes.06G153900 Manihot esculenta HOM05D001916 ORTHO05D003272 5.4e-07 59.7 119 37.0
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 5.4e-07 59.7 123 30.9
A03p29330 Brassica napus HOM05D001916 ORTHO05D003272 7.1e-07 59.3 124 32.3
BraA03t12130Z Brassica rapa HOM05D001916 ORTHO05D003272 7.1e-07 59.3 124 32.3
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 7.1e-07 59.3 125 32.8
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 9.2e-07 58.9 128 32.0
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 9.2e-07 58.9 128 32.0
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 9.2e-07 58.9 151 29.8
Cc02_g02210 Coffea canephora HOM05D001916 ORTHO05D003272 1.2e-06 58.5 128 32.0
Gohir.D12G255426 Gossypium hirsutum HOM05D001916 ORTHO05D003272 1.2e-06 58.5 132 31.8
Gohir.D12G255451 Gossypium hirsutum HOM05D001916 ORTHO05D003272 1.2e-06 58.5 132 31.8
Gorai.008G273400 Gossypium raimondii HOM05D001916 ORTHO05D003272 1.2e-06 58.5 132 31.8
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 1.2e-06 58.5 149 30.2
TPR.G30901 Trifolium pratense HOM05D000868 ORTHO05D000711 1.2e-06 58.5 113 36.3
Eucgr.A02714 Eucalyptus grandis HOM05D001916 ORTHO05D003272 1.6e-06 58.2 102 37.3
Gohir.A12G253000 Gossypium hirsutum HOM05D001916 ORTHO05D003272 1.6e-06 58.2 132 31.1
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 1.6e-06 58.2 166 25.9
C03p35430 Brassica napus HOM05D001916 ORTHO05D003272 2.1e-06 57.8 124 32.3
BolC3t15856H Brassica oleracea HOM05D001916 ORTHO05D003272 2.1e-06 57.8 124 32.3
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 2.1e-06 57.8 109 37.6
Oeu009294.1 Olea europaea HOM05D001916 ORTHO05D003272 2.1e-06 57.8 133 33.1
Ca_03995_v3 Cicer arietinum L. HOM05D000868 ORTHO05D000711 2.7e-06 57.4 144 34.0
HPP92_009818 Vanilla planifolia HOM05D001916 ORTHO05D003272 2.7e-06 57.4 112 34.8
BcaB05g23846 Brassica carinata HOM05D001916 ORTHO05D003272 3.5e-06 57.0 123 29.3
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 3.5e-06 57.0 109 36.7
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 3.5e-06 57.0 152 29.6
Glyma.16G176200 Glycine max HOM05D001916 ORTHO05D003272 3.5e-06 57.0 108 33.3
Lj2g0006755 Lotus japonicus HOM05D001916 ORTHO05D003272 3.5e-06 57.0 108 33.3
Phvul.004G104600 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 3.5e-06 57.0 107 34.6
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 4.6e-06 56.6 134 32.1
Phvul.007G277400 Phaseolus vulgaris HOM05D006451 ORTHO05D007680 4.6e-06 56.6 152 28.9
Psat6g104120 Pisum sativum HOM05D006451 ORTHO05D007680 4.6e-06 56.6 164 28.0
RcHm_v2.0_Chr1g0378891 Rosa chinensis HOM05D001916 ORTHO05D003272 4.6e-06 56.6 131 31.3
VMungo0464G1486 Vigna mungo HOM05D001916 ORTHO05D003272 4.6e-06 56.6 124 30.6
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 6.0e-06 56.2 141 27.7
MD01G1210400 Malus domestica HOM05D001916 ORTHO05D003272 6.0e-06 56.2 102 32.4
TPR.G25159 Trifolium pratense HOM05D006451 ORTHO05D007680 6.0e-06 56.2 164 28.7
A09p27900 Brassica napus HOM05D001916 ORTHO05D003272 7.8e-06 55.8 143 27.3
C09p35370 Brassica napus HOM05D001916 ORTHO05D003272 7.8e-06 55.8 129 30.2
BolC9t56378H Brassica oleracea HOM05D001916 ORTHO05D003272 7.8e-06 55.8 129 30.2
BraA09t38359Z Brassica rapa HOM05D001916 ORTHO05D003272 7.8e-06 55.8 143 27.3
CANSAT78G2142 Cannabis sativa HOM05D006451 ORTHO05D007680 7.8e-06 55.8 150 30.7
Nitab4.5_0000472g0280 Nicotiana tabacum HOM05D001916 ORTHO05D003272 7.8e-06 55.8 102 33.3
Nitab4.5_0007653g0010 Nicotiana tabacum HOM05D001916 ORTHO05D003272 7.8e-06 55.8 102 33.3


User provided reference genes

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