Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 8.6e-99 363.6 178 100.0
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 2.3e-88 328.9 176 90.9
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 6.0e-76 287.7 178 82.6
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 7.6e-71 270.8 174 74.1
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 7.6e-71 270.8 174 74.7
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 9.9e-71 270.4 174 73.6
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.3e-70 270.0 173 75.1
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.3e-70 270.0 178 72.5
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.7e-70 269.6 174 72.4
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.9e-70 268.9 178 71.9
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 6.4e-70 267.7 174 73.6
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 6.4e-70 267.7 174 74.1
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 8.4e-70 267.3 174 72.4
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.1e-69 266.9 174 73.0
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 1.4e-69 266.5 174 72.4
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.4e-69 266.5 174 72.4
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.4e-69 266.5 174 72.4
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.9e-69 266.2 174 73.0
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.9e-69 266.2 174 72.4
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.9e-69 266.2 174 72.4
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 2.4e-69 265.8 174 73.0
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.4e-69 265.8 174 73.0
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.2e-69 265.4 174 73.0
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 4.1e-69 265.0 174 71.8
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.4e-69 264.6 178 70.2
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.1e-69 264.2 178 70.8
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.1e-69 264.2 178 70.8
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 9.2e-69 263.8 178 70.8
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 9.2e-69 263.8 178 70.8
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 9.2e-69 263.8 174 71.8
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.6e-68 263.1 174 71.3
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.1e-68 262.7 174 70.7
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 2.1e-68 262.7 174 70.1
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 2.7e-68 262.3 174 72.4
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.7e-68 262.3 174 71.8
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.5e-68 261.9 172 72.7
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 4.6e-68 261.5 174 71.8
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.6e-68 261.5 174 70.1
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 4.6e-68 261.5 174 71.3
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 4.6e-68 261.5 178 70.2
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 6.0e-68 261.2 174 71.3
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 6.0e-68 261.2 178 70.8
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 6.0e-68 261.2 172 72.7
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 7.8e-68 260.8 173 71.1
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 7.8e-68 260.8 174 71.3
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.0e-67 260.4 174 70.1
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.0e-67 260.4 174 70.1
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.3e-67 260.0 174 70.7
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.3e-67 260.0 177 70.1
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.3e-67 260.0 173 71.1
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.3e-67 260.0 178 70.8
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.7e-67 259.6 174 69.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.3e-67 259.2 178 70.8
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 2.3e-67 259.2 173 72.3
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.3e-67 259.2 174 70.7
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 2.3e-67 259.2 174 70.7
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 3.0e-67 258.8 174 70.7
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 3.0e-67 258.8 174 70.1
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 3.0e-67 258.8 178 69.7
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 3.9e-67 258.5 174 70.7
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.1e-67 258.1 178 67.4
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 5.1e-67 258.1 174 69.5
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 5.1e-67 258.1 174 70.1
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 5.1e-67 258.1 174 69.0
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 6.6e-67 257.7 174 70.1
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 6.6e-67 257.7 172 71.5
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 6.6e-67 257.7 174 69.5
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 6.6e-67 257.7 178 69.7
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 6.6e-67 257.7 174 69.5
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 8.6e-67 257.3 174 70.7
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 8.6e-67 257.3 174 70.7
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 8.6e-67 257.3 178 69.7
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.5e-66 256.5 178 69.1
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.5e-66 256.5 174 70.7
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-66 256.1 178 69.1
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.9e-66 256.1 173 69.9
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.9e-66 256.1 178 70.2
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.3e-66 255.4 174 70.1
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 3.3e-66 255.4 174 70.7
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 3.3e-66 255.4 177 68.4
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 4.3e-66 255.0 174 70.1
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 5.6e-66 254.6 178 69.7
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.3e-66 254.2 178 67.4
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 7.3e-66 254.2 178 68.5
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 7.3e-66 254.2 172 70.9
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 9.6e-66 253.8 170 71.8
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 9.6e-66 253.8 173 70.5
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.6e-65 253.1 178 66.3
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.8e-65 252.3 174 69.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 2.8e-65 252.3 174 70.1
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.8e-65 252.3 173 68.8
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.6e-65 251.9 174 69.0
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 4.7e-65 251.5 174 69.0
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 6.2e-65 251.1 174 67.8
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 6.2e-65 251.1 173 69.4
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.1e-64 250.4 174 69.5
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 1.1e-64 250.4 176 68.2
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.4e-64 250.0 174 67.2
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.4e-64 250.0 178 68.0
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.4e-64 250.0 174 66.1
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.8e-64 249.6 173 67.6
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 2.4e-64 249.2 174 66.7
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.4e-64 249.2 174 66.7
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.4e-64 249.2 174 68.4
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 5.2e-64 248.1 170 68.8
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 5.2e-64 248.1 195 64.6
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 6.9e-64 247.7 174 66.1
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 9.0e-64 247.3 178 66.9
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 9.0e-64 247.3 195 64.6
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.8e-63 244.6 178 66.9
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.8e-63 244.6 173 65.3
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.3e-62 243.4 173 68.2
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.7e-62 243.0 178 64.6
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 2.2e-62 242.7 174 68.4
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.9e-62 242.3 180 67.2
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.9e-62 242.3 174 63.8
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 3.8e-62 241.9 200 61.5
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.8e-62 241.9 174 66.1
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 3.8e-62 241.9 174 67.2
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 6.4e-62 241.1 174 65.5
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.1e-61 240.4 174 65.5
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.9e-61 239.6 174 65.5
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 2.4e-61 239.2 174 64.9
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.4e-61 239.2 174 64.9
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 3.2e-61 238.8 174 64.9
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.4e-61 238.0 173 63.6
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 7.1e-61 237.7 178 64.6
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 9.3e-61 237.3 174 65.5
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 9.3e-61 237.3 174 66.1
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.6e-60 236.5 256 50.4
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.0e-60 234.6 168 66.7
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.8e-60 234.2 173 65.3
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.7e-59 233.0 174 64.4
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 6.6e-59 231.1 173 63.0
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.1e-58 230.3 178 66.3
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 4.8e-57 224.9 178 64.6
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 9.0e-56 220.7 155 67.1
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.4e-55 218.8 172 61.6
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.6e-52 209.9 173 59.0
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 5.1e-51 204.9 173 56.1
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.5e-50 203.4 175 56.0
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 5.6e-50 201.4 173 55.5
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.6e-49 199.9 121 74.4
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 3.7e-49 198.7 173 59.0
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.4e-48 196.1 121 72.7
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.8e-47 191.4 160 60.6
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-45 186.4 121 70.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.4e-45 186.0 121 69.4
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.2e-44 183.7 119 69.7
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.3e-43 180.3 127 67.7
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.6e-42 174.9 130 64.6
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.3e-41 173.7 124 67.7
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 3.1e-40 169.1 174 54.0
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 4.5e-39 165.2 121 62.0
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.9e-37 159.8 188 46.3
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.7e-34 148.3 123 57.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-30 137.1 125 56.0
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 9.3e-29 131.0 188 40.4
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 2.3e-27 126.3 86 72.1
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 6.7e-27 124.8 160 43.1
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.3e-25 118.2 128 51.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.3e-25 118.2 128 51.6
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.1e-24 117.5 182 37.4
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.5e-23 113.6 128 50.0
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 5.0e-22 108.6 261 30.3
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 2.2e-14 83.2 95 45.3
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 6.5e-14 81.6 83 49.4
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-13 80.1 49 71.4
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 9.4e-13 77.8 49 71.4
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.6e-12 77.0 49 69.4
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.7e-12 76.3 49 69.4
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.8e-11 73.6 48 68.8
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 6.7e-11 71.6 43 72.1
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 8.8e-11 71.2 43 72.1


User provided reference genes

Program Settings