Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 2.9e-160 568.5 295 100.0
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 2.1e-73 280.0 294 59.2
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 3.4e-68 262.7 304 54.3
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 1.3e-59 234.2 296 53.0
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 2.9e-59 233.0 299 50.8
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 4.9e-59 232.3 290 53.1
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 6.4e-59 231.9 300 51.7
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 1.9e-58 230.3 300 49.7
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 1.9e-58 230.3 272 55.1
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 5.5e-58 228.8 299 52.8
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 5.5e-58 228.8 300 53.7
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 2.1e-57 226.9 244 57.0
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 6.0e-57 225.3 292 52.4
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 2.5e-55 219.9 294 49.7
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 2.1e-54 216.9 291 49.8
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 2.8e-54 216.5 301 50.5
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 6.2e-54 215.3 302 49.0
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 2.4e-53 213.4 296 50.3
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 3.1e-53 213.0 303 50.5
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 9.0e-53 211.5 349 43.8
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 1.2e-52 211.1 305 46.9
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 1.5e-52 210.7 299 49.2
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 1.5e-52 210.7 298 48.7
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 2.0e-52 210.3 305 49.2
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 1.0e-51 208.0 300 49.3
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 8.4e-51 204.9 299 49.5
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 9.3e-50 201.4 301 49.2
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 7.9e-49 198.4 296 48.0
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.3e-48 197.6 293 47.8
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 2.5e-47 193.4 191 63.4
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 8.2e-46 188.3 268 50.4
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 1.1e-45 188.0 299 43.5
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 1.4e-45 187.6 193 60.6
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 3.1e-45 186.4 311 43.1
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 4.1e-45 186.0 304 43.4
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 5.3e-45 185.7 188 60.6
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 5.3e-45 185.7 290 45.2
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 1.2e-44 184.5 294 45.6
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 1.5e-44 184.1 302 48.0
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 4.5e-44 182.6 296 44.3
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 5.9e-44 182.2 243 51.9
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 7.7e-44 181.8 303 48.2
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.3e-43 181.0 303 47.2
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 6.5e-43 178.7 268 48.1
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 6.5e-43 178.7 268 48.1
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 1.4e-42 177.6 298 43.0
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 2.5e-42 176.8 313 43.8
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 1.2e-41 174.5 296 43.6
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.2e-41 174.5 317 41.3
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 7.9e-41 171.8 188 58.0
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 1.4e-40 171.0 318 41.5
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 1.5e-39 167.5 194 57.7
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 2.5e-39 166.8 182 61.5
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 3.3e-39 166.4 302 42.4
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 4.8e-38 162.5 195 53.8
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 4.8e-38 162.5 301 41.5
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 6.3e-38 162.2 208 49.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.1e-37 161.4 294 40.5
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 3.1e-37 159.8 244 45.9
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 9.1e-37 158.3 293 42.0
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 1.5e-36 157.5 312 41.3
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 3.4e-36 156.4 188 56.9
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 3.8e-35 152.9 193 52.3
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 5.0e-35 152.5 290 41.0
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 1.1e-34 151.4 306 38.6
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 1.9e-34 150.6 193 48.7
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 2.1e-33 147.1 191 50.3
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 7.9e-33 145.2 292 37.7
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 1.0e-32 144.8 189 51.9
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 1.1e-31 141.4 169 53.8
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 2.0e-31 140.6 256 39.5
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 5.7e-31 139.0 198 48.0
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 7.4e-31 138.7 252 40.5
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 9.7e-31 138.3 188 50.0
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 1.7e-30 137.5 270 39.6
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 4.8e-30 136.0 188 51.6
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.4e-29 134.4 115 67.8
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.8e-29 134.0 200 49.0
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 1.5e-28 131.0 253 40.3
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.6e-28 130.2 303 39.6
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 7.7e-28 128.6 302 40.4
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 3.8e-27 126.3 192 45.3
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 8.5e-27 125.2 307 38.8
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 6.3e-22 109.0 292 33.6
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 8.2e-22 108.6 194 41.2
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.4e-21 107.8 135 48.9
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 4.1e-21 106.3 307 34.2
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 5.3e-21 105.9 288 32.3
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 1.2e-20 104.8 117 50.4
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.6e-20 104.4 254 36.2
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 3.5e-20 103.2 221 38.5
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 2.9e-19 100.1 202 40.1
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 5.0e-19 99.4 292 34.6
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 4.2e-18 96.3 302 33.1
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 1.2e-17 94.7 289 32.5
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 1.2e-17 94.7 289 32.5
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 1.6e-17 94.4 201 41.8
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 4.7e-17 92.8 297 29.6
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 6.1e-17 92.4 292 30.5
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 4.0e-16 89.7 289 29.8
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 8.8e-16 88.6 146 45.2
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.5e-15 87.8 188 38.8
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 3.4e-15 86.7 296 30.4
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 5.7e-15 85.9 122 45.1
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 1.3e-14 84.7 146 43.8
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 2.2e-14 84.0 67 64.2
SalBow2G2623 Salvia bowleyana HOM05D000347 ORTHO05D008062 2.2e-14 84.0 296 33.1
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 1.6e-12 77.8 234 35.5
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 2.0e-12 77.4 167 36.5
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 5.9e-12 75.9 232 32.3
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 1.3e-11 74.7 223 34.1
EL10Ac7g17790 Beta vulgaris HOM05D000347 ORTHO05D008062 8.5e-11 72.0 254 29.1
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 1.1e-10 71.6 229 35.4
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 1.8e-08 64.3 79 50.6
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 1.8e-08 64.3 314 27.7
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 5.2e-08 62.8 229 34.1
Zm00001eb379630 Zea mays HOM05D042818 ORTHO05D008062 1.2e-07 61.6 166 33.1
Nitab4.5_0006773g0040 Nicotiana tabacum HOM05D000347 ORTHO05D008062 5.7e-07 59.3 42 66.7


User provided reference genes

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