Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 1.3e-185 652.9 321 100.0
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 2.6e-138 495.7 325 74.2
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 3.3e-133 478.8 319 74.6
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 7.3e-133 477.6 326 74.2
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 9.6e-133 477.2 319 72.4
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 3.6e-132 475.3 306 77.8
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 4.8e-132 474.9 318 72.6
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 4.8e-132 474.9 319 75.2
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 6.2e-132 474.6 318 72.3
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 1.1e-131 473.8 319 73.0
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.4e-131 473.4 306 75.5
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.8e-131 473.0 319 73.0
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.8e-131 473.0 319 73.0
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 6.9e-131 471.1 320 73.1
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 6.9e-131 471.1 318 72.3
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.5e-130 469.9 319 72.1
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 1.5e-130 469.9 318 72.6
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 2.6e-130 469.2 317 74.1
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 5.8e-130 468.0 320 73.1
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 5.8e-130 468.0 319 72.1
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 5.8e-130 468.0 318 72.3
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 7.6e-130 467.6 324 71.0
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 7.6e-130 467.6 319 72.4
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 7.6e-130 467.6 316 73.4
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 9.9e-130 467.2 319 70.5
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.3e-129 466.8 305 75.4
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.3e-129 466.8 319 71.8
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 2.2e-129 466.1 315 73.0
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 2.9e-129 465.7 316 72.5
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 4.9e-129 464.9 320 71.9
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 4.9e-129 464.9 322 71.4
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 4.9e-129 464.9 319 72.7
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 4.9e-129 464.9 316 72.5
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 8.4e-129 464.2 312 73.4
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.4e-128 463.4 319 73.0
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.9e-128 463.0 316 72.8
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 5.4e-128 461.5 319 71.8
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 5.4e-128 461.5 319 71.8
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.2e-127 460.3 327 68.2
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.7e-127 459.1 319 69.9
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 6.0e-127 458.0 319 71.5
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 6.0e-127 458.0 319 71.5
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 7.9e-127 457.6 321 72.3
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 7.9e-127 457.6 319 71.2
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 1.3e-126 456.8 317 72.2
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 5.1e-126 454.9 321 71.0
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 6.7e-126 454.5 316 69.3
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 6.7e-126 454.5 321 71.0
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 8.7e-126 454.1 315 70.8
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.1e-125 453.8 320 69.4
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.1e-125 453.8 316 69.9
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 1.9e-125 453.0 319 71.5
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 2.5e-125 452.6 319 70.5
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 7.4e-125 451.1 315 70.2
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 7.4e-125 451.1 323 70.9
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.3e-124 450.3 322 68.3
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 1.3e-124 450.3 320 70.0
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 4.8e-124 448.4 321 69.8
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 1.8e-123 446.4 319 69.6
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 6.9e-123 444.5 314 71.3
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.0e-122 443.0 316 68.7
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 2.0e-122 443.0 319 68.3
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 2.6e-122 442.6 318 69.8
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 9.9e-122 440.7 318 69.5
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 1.7e-121 439.9 319 68.7
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 2.2e-121 439.5 319 68.3
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 1.4e-120 436.8 319 67.7
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 3.2e-120 435.6 325 67.4
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 3.2e-120 435.6 327 68.8
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 5.5e-120 434.9 314 68.8
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 1.2e-119 433.7 321 67.6
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.6e-119 433.3 319 68.3
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.6e-119 433.3 313 67.4
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 2.1e-119 433.0 321 67.0
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 2.1e-119 433.0 321 67.0
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 3.5e-119 432.2 316 67.4
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 7.9e-119 431.0 321 67.0
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.0e-118 430.6 313 69.3
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 2.3e-118 429.5 322 66.8
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.1e-117 427.2 313 66.8
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.3e-117 425.6 313 66.1
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 1.8e-115 419.9 327 65.1
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.4e-115 419.5 314 66.9
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 9.0e-115 417.5 336 63.1
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.2e-114 417.2 346 62.1
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 1.2e-114 417.2 283 71.4
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 4.5e-114 415.2 307 68.1
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.7e-113 413.3 314 65.0
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 4.9e-113 411.8 315 65.4
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 2.5e-104 382.9 313 62.0
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 7.2e-104 381.3 308 64.0
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 2.7e-103 379.4 326 57.4
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 3.6e-103 379.0 377 55.2
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 8.8e-102 374.4 322 59.6
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 1.3e-100 370.5 285 66.3
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.1e-99 365.9 314 58.3
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 6.9e-99 364.8 321 59.5
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.9e-96 356.7 307 60.9
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 5.5e-96 355.1 235 74.5
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 4.7e-95 352.1 313 55.9
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 4.7e-95 352.1 311 54.7
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 1.0e-94 350.9 311 58.8
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.3e-93 345.9 312 55.1
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.2e-92 343.2 239 71.1
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.0e-86 324.3 285 58.9
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 2.8e-84 316.2 237 68.8
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 5.9e-82 308.5 352 48.6
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.2e-74 284.3 240 59.6
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 5.5e-72 275.4 197 66.5
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.3e-68 264.2 336 44.0
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 1.1e-67 261.2 187 67.9
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 4.5e-66 255.8 196 64.3
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.9e-64 250.4 214 61.2
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.6e-50 204.1 161 63.4
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 2.0e-50 203.8 214 50.0
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.9e-49 199.5 240 50.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.8e-47 193.4 298 40.9
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 4.7e-47 192.6 162 59.3
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 3.1e-46 189.9 106 84.0
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.5e-42 176.4 202 50.5
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 7.6e-37 158.7 355 34.1
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 2.1e-34 150.6 123 63.4
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.1e-32 144.8 312 34.9
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.7e-28 131.0 121 59.5
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 8.1e-23 112.1 81 65.4
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.4e-22 111.3 121 54.5
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 4.0e-22 109.8 120 51.7
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 6.9e-22 109.0 164 45.1
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 5.8e-21 105.9 110 48.2
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.3e-20 104.8 73 65.8
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 6.4e-20 102.4 95 57.9
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 2.4e-19 100.5 67 70.1
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.4e-19 100.5 156 37.8
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 6.0e-18 95.9 70 64.3
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.3e-16 90.1 62 71.0
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.8e-15 87.0 89 51.7
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 5.3e-14 82.8 83 57.8
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 4.5e-13 79.7 60 66.7
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 4.9e-12 76.3 83 49.4
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 4.8e-07 59.7 54 57.4
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.1e-06 58.5 33 72.7
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 6.9e-06 55.8 44 70.5


User provided reference genes

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