Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 1.1e-200 703.0 341 100.0
Dinv19203 Davidia involucrata HOM05D007028 ORTHO05D003658 2.9e-39 166.8 148 56.8
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 1.3e-34 151.4 123 61.8
Actinidia23722 Actinidia chinensis HOM05D007814 ORTHO05D009902 5.4e-33 146.0 126 57.9
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 5.4e-33 146.0 329 36.5
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 1.2e-32 144.8 86 75.6
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 1.6e-32 144.4 170 47.6
Hma1.2p1_0226F.1_g095710 Hydrangea macrophylla HOM05D007028 ORTHO05D003658 4.6e-32 142.9 127 60.6
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 4.6e-32 142.9 86 74.4
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 1.0e-31 141.7 331 32.6
Prupe.8G203000 Prunus persica HOM05D007028 ORTHO05D003658 6.6e-31 139.0 194 40.7
MD10G1164400 Malus domestica HOM05D007028 ORTHO05D003658 8.6e-31 138.7 131 52.7
Lsat_1_v5_gn_9_12301 Lactuca sativa HOM05D007028 ORTHO05D003658 3.3e-30 136.7 150 50.7
Nitab4.5_0000045g0190 Nicotiana tabacum HOM05D007028 ORTHO05D003658 3.3e-30 136.7 325 34.8
VMungo1383G2132 Vigna mungo HOM05D007028 ORTHO05D003658 7.3e-30 135.6 140 50.7
Migut.N00615 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.2e-29 134.8 187 44.4
Cfa002571 Carpinus fangiana HOM05D007028 ORTHO05D003658 1.6e-29 134.4 323 31.6
Potri.002G242400 Populus trichocarpa HOM05D007028 ORTHO05D003658 2.8e-29 133.7 320 31.9
COL.COLO4_04560 Corchorus olitorius HOM05D007028 ORTHO05D003658 4.7e-29 132.9 124 54.8
Glyma.03G080500 Glycine max HOM05D007028 ORTHO05D003658 4.7e-29 132.9 103 62.1
MD05G1175300 Malus domestica HOM05D007028 ORTHO05D003658 4.7e-29 132.9 188 38.8
Thecc.01G225600 Theobroma cacao HOM05D007028 ORTHO05D003658 6.8e-28 129.0 124 53.2
Ciclev10023784m.g Citrus clementina HOM05D007028 ORTHO05D003658 1.2e-27 128.3 232 35.3
Medtr7g057900 Medicago truncatula HOM05D007028 ORTHO05D003658 1.2e-27 128.3 102 57.8
Nitab4.5_0003312g0020 Nicotiana tabacum HOM05D007028 ORTHO05D003658 1.2e-27 128.3 96 63.5
Cpa.g.sc8.155 Carica papaya HOM05D007028 ORTHO05D003658 1.5e-27 127.9 120 53.3
QL09p054524 Quercus lobata HOM05D007028 ORTHO05D003658 1.3e-26 124.8 81 66.7
FvH4_2g19050 Fragaria vesca HOM05D007028 ORTHO05D003658 3.2e-25 120.2 131 48.9
FAN27G2710 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.1e-25 119.8 131 48.1
Psat5g168520 Pisum sativum HOM05D007028 ORTHO05D003658 4.1e-25 119.8 101 57.4
Manes.12G044800 Manihot esculenta HOM05D007028 ORTHO05D003658 7.0e-25 119.0 316 29.4
FAN24G0765 Fragaria x ananassa HOM05D007028 ORTHO05D003658 9.2e-25 118.6 131 48.1
TPR.G23292 Trifolium pratense HOM05D007028 ORTHO05D003658 9.2e-25 118.6 117 52.1
Actinidia37594 Actinidia chinensis HOM05D007028 ORTHO05D003658 1.2e-24 118.2 301 32.6
TAR633G1987 Trochodendron aralioides HOM05D007028 ORTHO05D003658 1.2e-24 118.2 128 48.4
FAN15G3354 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.0e-24 117.5 89 58.4
Sed0022017 Sechium edule HOM05D007028 ORTHO05D003658 7.8e-24 115.5 80 66.2
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 1.0e-23 115.2 80 63.8
Gohir.A11G138300 Gossypium hirsutum HOM05D007028 ORTHO05D003658 1.3e-23 114.8 124 46.0
Gorai.007G154400 Gossypium raimondii HOM05D007028 ORTHO05D003658 1.3e-23 114.8 124 46.0
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 3.0e-23 113.6 80 65.0
CsaV3_7G025940 Cucumis sativus L. HOM05D007028 ORTHO05D003658 3.9e-23 113.2 80 66.2
Gohir.D11G144200 Gossypium hirsutum HOM05D007028 ORTHO05D003658 3.9e-23 113.2 124 45.2
Lsat_1_v5_gn_2_16281 Lactuca sativa HOM05D007028 ORTHO05D003658 3.9e-23 113.2 81 59.3
Manes.09G183300 Manihot esculenta HOM05D007028 ORTHO05D003658 2.5e-22 110.5 121 49.6
Lj2C51T14 Lonicera japonica HOM05D007028 ORTHO05D003658 4.3e-22 109.8 80 60.0
ECA238G1648 Erigeron canadensis HOM05D007028 ORTHO05D003658 9.5e-22 108.6 98 55.1
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 1.4e-20 104.8 101 49.5
Lsat_1_v5_gn_8_3220 Lactuca sativa HOM05D007028 ORTHO05D003658 1.4e-20 104.8 81 54.3
Glyma.19G251200 Glycine max HOM05D007028 ORTHO05D003658 3.1e-20 103.6 194 35.6
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 4.0e-20 103.2 77 55.8
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 4.0e-20 103.2 77 55.8
ATR0215G032 Amborella trichopoda HOM05D007028 ORTHO05D003658 6.8e-20 102.4 73 61.6
Manes.08G105400 Manihot esculenta HOM05D007028 ORTHO05D003658 8.9e-20 102.1 115 46.1
DCAR_005532 Daucus carota HOM05D007028 ORTHO05D003658 1.5e-19 101.3 86 54.7
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 2.6e-19 100.5 73 60.3
Eucgr.H01353 Eucalyptus grandis HOM05D007028 ORTHO05D003658 4.4e-19 99.8 93 51.6
Haze_24802 Corylus avellana HOM05D007028 ORTHO05D003658 2.2e-18 97.4 64 65.6
Glyma.03G253700 Glycine max HOM05D007028 ORTHO05D003658 6.4e-18 95.9 75 54.7
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 9.2e-17 92.0 91 48.4
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 3.0e-15 87.0 91 44.0
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 4.3e-14 83.2 82 50.0
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 7.3e-14 82.4 91 42.9
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 1.6e-13 81.3 83 44.6
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 6.2e-13 79.3 87 46.0
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 6.2e-13 79.3 82 43.9
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 8.1e-13 79.0 80 43.8
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 8.1e-13 79.0 112 38.4
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 1.1e-12 78.6 104 37.5
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 1.4e-12 78.2 86 39.5
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 1.8e-12 77.8 183 29.0
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 3.1e-12 77.0 87 44.8
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 4.0e-12 76.6 82 42.7
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 4.0e-12 76.6 112 35.7
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 5.2e-12 76.3 101 40.6
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 5.2e-12 76.3 138 32.6
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 6.8e-12 75.9 111 36.9
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 6.8e-12 75.9 89 42.7
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 8.9e-12 75.5 82 40.2
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 1.5e-11 74.7 79 44.3
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 2.6e-11 73.9 109 35.8
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.6e-11 73.9 109 37.6
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 3.4e-11 73.6 102 36.3
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 3.4e-11 73.6 109 38.5
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 4.4e-11 73.2 236 26.7
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 5.8e-11 72.8 104 35.6
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 5.8e-11 72.8 112 34.8
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 7.6e-11 72.4 234 25.6
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 7.6e-11 72.4 84 42.9
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 9.9e-11 72.0 82 40.2
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 9.9e-11 72.0 104 36.5
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 9.9e-11 72.0 237 27.0
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 9.9e-11 72.0 145 29.7
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 1.7e-10 71.2 90 38.9
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 2.9e-10 70.5 234 25.2
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 3.8e-10 70.1 87 41.4
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 3.8e-10 70.1 99 35.4
Actinidia18232 Actinidia chinensis HOM05D007028 ORTHO05D003658 4.9e-10 69.7 59 47.5
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 4.9e-10 69.7 74 44.6
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.9e-10 69.7 74 44.6
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.4e-10 68.9 68 44.1
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.4e-10 68.9 68 44.1
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.4e-10 68.9 68 44.1
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 1.4e-09 68.2 170 30.6
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 1.4e-09 68.2 170 30.6
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 2.4e-09 67.4 69 50.7
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 3.2e-09 67.0 77 42.9
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 3.2e-09 67.0 116 32.8
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 4.1e-09 66.6 87 36.8
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 4.1e-09 66.6 77 45.5
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 4.1e-09 66.6 68 44.1
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 4.1e-09 66.6 74 45.9
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 5.4e-09 66.2 68 47.1
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 5.4e-09 66.2 124 30.6
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 7.1e-09 65.9 69 49.3
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.1e-09 65.9 69 49.3
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 7.1e-09 65.9 86 36.0
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 7.1e-09 65.9 80 42.5
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.2e-08 65.1 69 49.3
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 1.2e-08 65.1 73 43.8
Sabra02G0184700 Salix brachista HOM05D007028 ORTHO05D003658 1.2e-08 65.1 49 61.2
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 1.6e-08 64.7 77 37.7
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 1.6e-08 64.7 120 30.8
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 1.6e-08 64.7 82 43.9
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.1e-08 64.3 69 47.8
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.1e-08 64.3 69 49.3
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 3.5e-08 63.5 68 42.6
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 3.5e-08 63.5 82 42.7
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 3.5e-08 63.5 88 39.8
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 3.5e-08 63.5 69 46.4
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 4.6e-08 63.2 81 34.6
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 6.0e-08 62.8 79 40.5
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 7.8e-08 62.4 96 34.4
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 1.0e-07 62.0 76 35.5
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.0e-07 62.0 88 38.6
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.3e-07 61.6 68 41.2
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 1.3e-07 61.6 115 29.6
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 1.3e-07 61.6 77 39.0
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 1.3e-07 61.6 81 38.3
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.3e-07 61.6 68 45.6
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 1.7e-07 61.2 75 36.0
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 1.7e-07 61.2 98 38.8
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.7e-07 61.2 109 34.9
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.7e-07 61.2 68 44.1
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 1.7e-07 61.2 68 42.6
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 2.3e-07 60.8 77 44.2
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 2.3e-07 60.8 82 34.1
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 2.3e-07 60.8 69 40.6
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 3.9e-07 60.1 82 41.5
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.9e-07 60.1 109 33.9
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.9e-07 60.1 109 33.9
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 5.1e-07 59.7 153 30.1
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 5.1e-07 59.7 84 38.1
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 5.1e-07 59.7 69 44.9
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 5.1e-07 59.7 68 47.1
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 5.1e-07 59.7 104 32.7
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 6.6e-07 59.3 84 38.1
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 6.6e-07 59.3 84 38.1
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 6.6e-07 59.3 77 33.8
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 6.6e-07 59.3 85 31.8
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 8.6e-07 58.9 68 38.2
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 8.6e-07 58.9 80 36.2
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 1.1e-06 58.5 137 29.2
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.1e-06 58.5 68 36.8
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.1e-06 58.5 117 29.9
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.1e-06 58.5 154 27.9
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 1.5e-06 58.2 85 29.4
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 1.9e-06 57.8 82 37.8
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 1.9e-06 57.8 85 30.6
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 1.9e-06 57.8 69 43.5
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 3.3e-06 57.0 68 38.2
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 3.3e-06 57.0 68 36.8
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 4.3e-06 56.6 69 37.7
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 4.3e-06 56.6 68 36.8
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 4.3e-06 56.6 76 35.5
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 5.6e-06 56.2 88 35.2
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 5.6e-06 56.2 68 38.2
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 7.3e-06 55.8 54 51.9
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 7.3e-06 55.8 85 29.4
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 9.6e-06 55.5 68 41.2
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 9.6e-06 55.5 83 32.5
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 9.6e-06 55.5 85 30.6
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 9.6e-06 55.5 75 32.0
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 9.6e-06 55.5 98 32.7


User provided reference genes

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