Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g16920 Coffea canephora HOM05D005458 ORTHO05D005672 3.0e-28 127.9 67 100.0
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.9e-11 72.0 59 69.5
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 2.1e-10 68.6 59 66.1
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 3.7e-10 67.8 50 76.0
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 3.7e-10 67.8 49 77.6
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 8.2e-10 66.6 57 71.9
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 1.1e-09 66.2 55 67.3
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.4e-09 65.9 55 69.1
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.8e-09 65.5 48 77.1
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 2.4e-09 65.1 49 73.5
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 2.4e-09 65.1 60 71.7
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 3.1e-09 64.7 38 89.5
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 4.0e-09 64.3 37 89.2
ClCG09G008920 Citrullus lanatus HOM05D001590 ORTHO05D005672 4.0e-09 64.3 52 69.2
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.0e-09 64.3 55 70.9
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 5.3e-09 63.9 51 72.5
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 9.0e-09 63.2 54 68.5
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 9.0e-09 63.2 38 86.8
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 1.2e-08 62.8 39 82.1
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 2.0e-08 62.0 49 71.4
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 2.6e-08 61.6 58 62.1
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 4.5e-08 60.8 56 69.6
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 4.5e-08 60.8 51 68.6
Rhsim13G0046400 Rhododendron simsii HOM05D005458 ORTHO05D005672 4.5e-08 60.8 37 83.8
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 4.5e-08 60.8 57 64.9
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 5.8e-08 60.5 35 91.4
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 5.8e-08 60.5 48 77.1
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 7.6e-08 60.1 55 65.5
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 1.3e-07 59.3 56 69.6
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 1.3e-07 59.3 38 84.2
Rhsim04G0088400 Rhododendron simsii HOM05D005388 ORTHO05D006281 1.7e-07 58.9 57 63.2
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 2.9e-07 58.2 53 69.8
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 6.5e-07 57.0 57 66.7
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 6.5e-07 57.0 56 66.1
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 8.4e-07 56.6 49 67.3
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 8.4e-07 56.6 38 81.6
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 8.4e-07 56.6 38 81.6
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 8.4e-07 56.6 53 69.8
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 8.4e-07 56.6 35 82.9
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 8.4e-07 56.6 35 82.9
Glyma.16G094600 Glycine max HOM05D005458 ORTHO05D005672 8.4e-07 56.6 34 85.3
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 8.4e-07 56.6 56 66.1
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 1.1e-06 56.2 33 90.9
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 1.1e-06 56.2 33 90.9
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 1.1e-06 56.2 39 82.1
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 1.4e-06 55.8 56 66.1
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 1.9e-06 55.5 56 64.3
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 1.9e-06 55.5 57 64.9
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 1.9e-06 55.5 57 64.9
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 2.5e-06 55.1 51 70.6
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 2.5e-06 55.1 54 68.5
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 2.5e-06 55.1 50 68.0
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 2.5e-06 55.1 45 68.9
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 2.5e-06 55.1 56 69.6
Sed0009755 Sechium edule HOM05D005458 ORTHO05D005672 2.5e-06 55.1 35 80.0
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 2.5e-06 55.1 53 62.3
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 3.2e-06 54.7 39 74.4
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 3.2e-06 54.7 40 80.0
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 3.2e-06 54.7 40 80.0
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 3.2e-06 54.7 49 71.4
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 4.2e-06 54.3 45 66.7
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 4.2e-06 54.3 52 61.5
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 4.2e-06 54.3 57 61.4
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 5.5e-06 53.9 51 66.7
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 5.5e-06 53.9 35 80.0
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 5.5e-06 53.9 35 80.0
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 5.5e-06 53.9 51 64.7
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 5.5e-06 53.9 39 79.5
CSS0011663 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 7.1e-06 53.5 42 73.8
MELO3C021034.2 Cucumis melo HOM05D005458 ORTHO05D005672 7.1e-06 53.5 48 62.5
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 7.1e-06 53.5 35 80.0
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 7.1e-06 53.5 44 68.2
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 9.3e-06 53.1 54 61.1
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 9.3e-06 53.1 54 61.1
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 9.3e-06 53.1 55 61.8


User provided reference genes

Program Settings