Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 0.0e+00 1137.1 599 100.0
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 3.0e-297 1024.6 599 88.0
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 7.7e-293 1010.0 599 87.1
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 8.8e-289 996.5 599 86.3
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 1.1e-288 996.1 599 86.8
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 3.3e-288 994.6 599 86.0
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 2.4e-286 988.4 597 85.3
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 2.4e-286 988.4 597 85.3
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 3.1e-286 988.0 597 85.1
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 1.2e-285 986.1 599 85.1
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.5e-285 985.7 599 85.5
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 5.9e-285 983.8 599 85.5
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 7.7e-285 983.4 591 84.4
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.8e-281 969.9 599 83.6
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.6e-280 968.4 599 83.5
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.6e-277 959.1 598 82.3
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 8.5e-276 953.4 598 82.9
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.9e-275 952.2 599 81.6
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.6e-274 949.1 600 83.2
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.0e-273 946.4 599 82.8
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.2e-271 938.7 598 82.1
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 9.1e-270 933.3 602 82.2
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.6e-269 932.6 597 79.7
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 2.0e-269 932.2 603 82.3
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 4.5e-269 931.0 600 80.3
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 5.0e-268 927.5 597 79.1
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 5.5e-267 924.1 600 79.0
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.2e-266 922.9 599 79.5
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 3.0e-265 918.3 597 80.9
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 2.0e-264 915.6 599 80.1
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 4.4e-264 914.4 598 79.9
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 1.7e-263 912.5 597 79.1
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.1e-262 909.8 597 78.2
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.4e-262 908.7 597 78.4
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 9.1e-262 906.7 597 78.6
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 4.5e-261 904.4 597 78.9
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 5.9e-261 904.0 599 79.1
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.0e-260 903.3 590 79.3
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.0e-260 903.3 597 78.9
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 3.8e-260 901.4 597 79.1
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.9e-259 899.0 597 77.9
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.6e-258 896.0 597 75.5
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.8e-258 895.2 598 78.8
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 2.8e-258 895.2 597 78.7
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 8.0e-258 893.6 597 78.4
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 5.2e-257 891.0 597 78.2
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.5e-256 889.4 597 77.7
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 3.4e-256 888.3 608 75.5
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 3.4e-256 888.3 598 76.6
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.2e-253 879.8 597 77.9
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.7e-253 878.6 608 72.2
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.7e-253 878.6 604 76.3
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 4.5e-253 877.9 598 77.9
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.5e-253 877.9 598 75.4
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.7e-252 875.9 598 75.1
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.7e-252 875.9 607 75.1
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.3e-252 875.5 608 71.7
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.9e-252 875.2 598 77.1
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.1e-251 873.2 602 76.1
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 2.5e-251 872.1 598 75.8
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.5e-251 872.1 602 75.9
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.5e-251 872.1 600 75.8
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.3e-251 871.3 602 75.7
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 2.8e-250 868.6 600 74.7
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 4.7e-250 867.8 600 75.3
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.8e-249 865.9 598 76.8
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 8.9e-249 863.6 874 58.2
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 6.4e-247 857.4 606 74.8
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.9e-246 855.9 600 74.3
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.4e-246 855.5 600 74.3
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 3.2e-246 855.1 600 74.3
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 9.2e-246 853.6 601 75.2
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.0e-245 852.4 600 74.3
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 2.0e-245 852.4 605 74.2
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.7e-245 852.0 602 74.1
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 4.6e-245 851.3 603 74.8
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 4.6e-245 851.3 597 74.2
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 4.6e-245 851.3 597 74.2
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 4.6e-245 851.3 601 74.2
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 6.0e-245 850.9 605 74.7
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 3.9e-244 848.2 611 73.2
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 5.0e-244 847.8 605 72.9
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 8.6e-244 847.0 597 74.2
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 8.6e-244 847.0 597 74.2
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 8.6e-244 847.0 597 74.2
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 1.9e-243 845.9 597 74.0
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 5.6e-243 844.3 600 74.2
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 5.6e-243 844.3 601 74.7
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.1e-242 842.4 608 72.9
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.3e-241 839.0 597 75.0
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 2.0e-240 835.9 597 75.4
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.7e-239 832.8 601 72.7
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 8.3e-239 830.5 591 71.6
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 7.8e-237 823.9 597 72.5
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.3e-236 823.2 597 72.2
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.3e-236 823.2 607 72.3
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 4.3e-235 818.1 615 70.6
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.4e-233 813.1 603 70.1
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 4.0e-233 811.6 596 71.6
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 7.1e-230 800.8 609 69.8
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 3.5e-229 798.5 596 70.1
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.5e-227 793.1 596 69.8
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 7.3e-227 790.8 604 69.2
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 8.9e-225 783.9 596 69.8
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.2e-224 783.5 597 68.2
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 5.8e-224 781.2 597 68.2
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 1.3e-223 780.0 602 68.9
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.7e-223 779.6 548 73.7
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 6.6e-220 767.7 556 70.0
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.5e-219 765.8 611 66.8
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.8e-218 762.3 611 65.8
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 4.8e-218 761.5 644 64.8
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 2.7e-213 745.7 609 66.2
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.3e-212 742.7 600 67.3
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.8e-210 735.7 618 63.9
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 2.4e-206 722.6 597 64.8
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.3e-203 711.8 602 64.5
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.9e-199 699.1 597 64.5
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.1e-190 670.6 567 62.8
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-181 640.6 476 70.4
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.5e-176 623.6 521 67.2
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.1e-173 613.2 446 74.7
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.0e-164 582.8 598 56.5
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 2.3e-156 556.6 604 52.3
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 2.7e-149 533.1 607 49.9
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 5.0e-143 512.3 603 51.4
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 3.3e-134 483.0 616 45.3
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 9.8e-131 471.5 601 50.1
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.3e-124 450.3 589 45.2
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 8.7e-95 352.1 209 83.7
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.1e-93 345.5 243 72.0
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.1e-78 298.5 324 52.8
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 5.3e-76 289.7 602 35.5
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 2.1e-72 277.7 238 65.5
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.8e-69 267.3 273 57.5
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 5.9e-59 233.0 603 29.7
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 1.5e-49 201.8 139 71.2
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 6.5e-42 176.4 151 62.9
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.8e-31 141.7 98 68.4
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.4e-28 131.3 201 41.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.5e-25 121.3 78 76.9
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 5.6e-25 120.2 214 50.0
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 3.6e-24 117.5 611 25.0
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 6.1e-24 116.7 78 69.2
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 5.2e-23 113.6 78 67.9
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.7e-18 98.6 115 43.5
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.5e-14 85.5 90 48.9
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.3e-13 82.4 97 45.4
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.7e-13 82.0 59 69.5


User provided reference genes

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