Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 3.8e-282 974.2 493 100.0
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 1.8e-202 709.5 552 69.9
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 2.8e-200 702.2 552 69.0
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 3.1e-199 698.7 554 68.6
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.1e-191 672.2 553 66.0
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 6.5e-189 664.5 556 65.6
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 7.2e-188 661.0 546 64.8
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.2e-187 660.2 552 63.9
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 3.0e-186 655.6 553 64.4
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.5e-185 653.3 546 64.8
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 3.3e-185 652.1 563 65.5
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 9.7e-185 650.6 554 65.2
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.7e-184 649.8 550 64.2
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.7e-184 649.8 550 64.0
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.2e-184 649.4 552 63.2
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 8.2e-184 647.5 549 64.5
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.1e-183 647.1 553 64.7
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.8e-183 646.4 560 64.1
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 3.1e-183 645.6 552 64.7
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 9.1e-183 644.0 548 63.7
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 2.6e-182 642.5 560 65.2
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.3e-181 640.2 553 64.2
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.7e-181 639.8 557 64.5
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 2.9e-181 639.0 554 63.4
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 6.5e-181 637.9 548 65.1
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 6.5e-181 637.9 558 63.4
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 3.2e-180 635.6 549 64.7
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.5e-180 634.8 557 63.2
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 9.4e-180 634.0 557 63.9
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 6.1e-179 631.3 546 62.8
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 8.0e-179 630.9 446 75.3
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 8.0e-179 630.9 546 63.0
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 1.0e-178 630.6 563 62.5
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.4e-178 630.2 558 62.5
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 5.2e-178 628.2 546 62.6
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.2e-177 627.1 546 62.8
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 5.7e-177 624.8 552 61.2
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 9.7e-177 624.0 553 62.2
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.2e-176 622.9 552 61.1
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.2e-176 622.9 565 61.4
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 2.8e-176 622.5 605 57.5
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 4.8e-176 621.7 631 57.5
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 8.2e-176 620.9 554 62.8
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 8.2e-176 620.9 549 62.7
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 6.5e-173 611.3 558 61.3
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.1e-172 610.5 530 62.3
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.5e-172 609.4 551 60.1
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 3.2e-172 609.0 561 61.0
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 4.7e-171 605.1 557 60.3
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.0e-170 604.0 610 58.5
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 8.3e-168 594.3 559 61.2
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 5.4e-167 591.7 555 62.0
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 5.4e-167 591.7 558 60.4
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.2e-166 590.5 555 60.0
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 3.5e-166 589.0 552 61.1
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 7.7e-166 587.8 555 61.6
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 1.0e-165 587.4 556 61.3
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 6.6e-165 584.7 553 59.5
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 1.1e-164 583.9 541 61.6
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 6.8e-162 574.7 539 59.4
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 8.9e-162 574.3 554 61.0
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 1.2e-161 573.9 555 60.9
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.2e-161 573.9 688 51.0
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 2.0e-161 573.2 556 60.3
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 5.7e-161 571.6 554 58.7
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 7.5e-161 571.2 687 50.8
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 6.3e-160 568.2 563 57.5
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 7.8e-158 561.2 563 57.0
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.3e-157 560.5 577 56.2
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 2.9e-157 559.3 576 55.6
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 8.6e-157 557.8 589 55.5
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 2.5e-156 556.2 564 57.3
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 7.3e-156 554.7 558 59.0
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 9.5e-156 554.3 540 59.8
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 2.6e-153 546.2 546 59.2
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 9.8e-153 544.3 542 59.4
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.2e-152 543.1 523 60.2
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 6.4e-152 541.6 560 57.5
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 1.4e-151 540.4 552 58.5
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 5.0e-149 531.9 564 56.0
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.2e-147 527.3 468 62.8
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.1e-146 524.2 639 51.8
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 2.3e-146 523.1 468 60.5
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 3.1e-146 522.7 566 53.7
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 4.0e-146 522.3 563 56.5
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 5.2e-146 521.9 582 53.1
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.6e-145 519.6 571 55.9
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 5.8e-145 518.5 554 54.5
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.7e-144 516.9 565 54.2
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.7e-144 516.9 556 56.3
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 4.9e-144 515.4 572 54.0
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 1.1e-143 514.2 563 53.6
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 5.4e-143 511.9 531 58.8
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 9.2e-143 511.1 566 53.7
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 1.6e-142 510.4 432 66.9
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.6e-142 510.4 567 53.4
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 2.1e-142 510.0 569 52.9
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 5.1e-141 505.4 541 54.2
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 6.6e-141 505.0 566 53.2
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.6e-139 500.4 516 55.8
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 4.9e-136 488.8 570 53.3
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 8.3e-136 488.0 570 53.3
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 8.3e-136 488.0 570 53.3
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 5.4e-135 485.3 451 60.8
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.1e-132 477.6 570 51.8
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 3.3e-132 476.1 570 51.6
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 5.1e-125 452.2 561 50.1
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.5e-124 450.7 390 62.6
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 1.3e-112 411.0 415 57.8
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 8.4e-112 408.3 527 46.5
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 2.1e-110 403.7 559 45.6
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 4.9e-104 382.5 409 54.3
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 6.4e-104 382.1 544 46.7
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.4e-103 380.9 562 46.6
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 7.4e-100 368.6 583 43.6
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.3e-75 288.1 571 37.5
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 2.2e-75 287.3 542 39.3
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 9.1e-74 282.0 361 47.6
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 2.2e-67 260.8 434 41.2
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 2.1e-62 244.2 422 41.2
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 2.0e-57 227.6 260 47.3
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 1.6e-54 218.0 310 45.5
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 5.6e-31 139.8 84 79.8
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.6e-25 121.7 86 70.9
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.3e-23 114.0 123 53.7
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 9.5e-23 112.5 86 67.4
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 8.1e-22 109.4 154 44.2
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 2.0e-20 104.8 172 34.3
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.6e-20 104.4 78 69.2
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 4.6e-17 93.6 237 30.8
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.1e-15 89.0 167 35.9
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.1e-15 89.0 217 28.6
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 2.5e-15 87.8 222 30.6


User provided reference genes

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