Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 5.7e-127 457.6 231 100.0
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 4.4e-79 298.5 222 73.4
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 3.1e-77 292.4 236 71.2
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 9.2e-77 290.8 234 66.7
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 2.0e-76 289.7 222 71.6
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.7e-75 286.6 203 75.4
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.7e-75 286.6 243 65.0
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.3e-75 286.2 238 68.5
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 2.9e-75 285.8 223 68.2
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 6.6e-75 284.6 235 66.8
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 6.6e-75 284.6 235 69.4
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.5e-74 282.7 236 69.1
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.6e-73 280.0 235 67.7
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.6e-73 280.0 194 75.8
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 6.1e-73 278.1 235 67.2
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 2.3e-72 276.2 235 67.2
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 6.8e-72 274.6 235 65.1
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 8.9e-72 274.2 211 68.2
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.3e-70 270.4 185 77.8
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.3e-70 270.4 188 76.6
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 2.9e-70 269.2 236 67.4
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 4.9e-70 268.5 187 75.9
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.1e-69 267.3 223 66.4
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.4e-69 266.2 235 63.8
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.2e-69 265.8 222 66.2
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.2e-69 265.8 222 66.2
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 5.4e-69 265.0 201 71.1
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 7.0e-69 264.6 235 62.6
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 7.0e-69 264.6 238 63.9
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 4.6e-68 261.9 235 62.6
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 6.0e-68 261.5 223 67.3
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 6.0e-68 261.5 238 63.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 1.0e-67 260.8 235 62.6
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 1.7e-67 260.0 238 62.2
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 2.3e-67 259.6 204 69.6
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 2.5e-66 256.1 239 63.2
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 9.5e-66 254.2 225 63.6
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.1e-65 253.1 225 63.6
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 2.8e-65 252.7 223 63.2
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.8e-65 252.7 225 61.3
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 6.2e-65 251.5 236 62.7
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 6.2e-65 251.5 236 63.6
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 6.2e-65 251.5 234 61.1
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 8.0e-65 251.1 235 62.6
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 2.3e-64 249.6 236 61.4
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 2.3e-64 249.6 235 62.1
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 3.1e-64 249.2 198 68.7
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 5.2e-64 248.4 241 61.4
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 2.0e-63 246.5 225 60.9
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.8e-63 245.0 203 65.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.8e-63 245.0 203 65.5
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.5e-63 244.6 203 66.0
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.8e-63 244.2 235 60.9
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.7e-62 243.4 236 62.3
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.7e-62 243.4 317 51.1
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.7e-62 243.4 242 60.3
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 2.2e-62 243.0 249 58.6
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.9e-62 241.9 231 60.6
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.9e-62 241.9 235 60.0
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.1e-61 240.7 207 65.2
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 4.1e-61 238.8 229 59.0
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.1e-61 238.8 231 59.7
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.2e-60 237.3 225 61.3
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-60 236.9 235 58.7
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 2.3e-59 233.0 251 55.0
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 3.9e-59 232.3 223 61.9
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.1e-59 231.9 236 57.6
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 6.6e-59 231.5 236 55.9
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-58 230.7 236 57.6
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.5e-58 229.6 236 56.8
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 5.6e-58 228.4 235 59.6
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 7.3e-58 228.0 218 58.3
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 1.4e-56 223.8 217 59.4
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 2.3e-56 223.0 206 58.3
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.3e-56 223.0 223 58.3
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 2.6e-55 219.5 330 45.8
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 4.4e-55 218.8 226 56.2
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.3e-54 217.2 215 58.1
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.2e-54 216.5 169 70.4
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.9e-54 216.1 237 54.4
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 4.9e-54 215.3 233 57.9
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 4.9e-54 215.3 236 55.5
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 4.9e-54 215.3 237 56.5
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 4.9e-54 215.3 235 57.0
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 8.3e-54 214.5 228 56.1
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.1e-53 214.2 256 54.3
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.4e-53 213.8 234 55.6
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.9e-53 213.4 235 54.9
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 4.1e-53 212.2 235 54.5
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 9.2e-53 211.1 146 76.0
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.6e-52 210.3 235 54.9
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 7.8e-52 208.0 205 59.5
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 7.8e-52 208.0 184 63.6
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.0e-51 207.6 236 55.1
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.7e-51 206.8 177 65.5
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 3.9e-51 205.7 205 60.5
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 5.1e-51 205.3 226 56.2
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 8.6e-51 204.5 236 55.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.3e-50 202.2 220 57.3
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 9.5e-50 201.1 235 54.5
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 1.2e-49 200.7 279 46.6
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.6e-49 200.3 235 54.0
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 2.8e-49 199.5 196 60.7
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 4.7e-49 198.7 208 58.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.7e-49 198.7 219 56.2
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 8.1e-49 198.0 203 58.6
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.4e-48 197.2 193 61.7
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.8e-48 196.8 211 57.3
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 4.0e-48 195.7 227 54.6
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 5.2e-48 195.3 182 58.8
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 5.2e-48 195.3 190 56.3
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.2e-47 194.1 228 51.3
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 1.2e-47 194.1 186 58.1
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 3.4e-47 192.6 189 58.2
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 4.4e-47 192.2 234 53.8
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.2e-46 189.9 242 51.2
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.2e-44 184.1 225 50.7
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 2.7e-44 183.0 171 57.9
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.5e-44 182.6 243 49.4
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.7e-43 180.3 194 56.7
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 3.0e-43 179.5 235 49.4
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.9e-43 179.1 244 45.1
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.5e-42 177.2 243 48.6
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.5e-42 176.4 240 48.8
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 4.3e-42 175.6 236 51.3
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 5.6e-42 175.3 276 43.8
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 7.3e-42 174.9 206 51.0
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 3.6e-41 172.6 225 47.6
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 6.2e-41 171.8 242 50.0
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.1e-40 171.0 170 58.2
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 4.0e-40 169.1 158 60.8
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 5.3e-40 168.7 198 53.0
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 3.4e-39 166.0 194 51.0
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 3.4e-39 166.0 215 48.8
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 4.4e-39 165.6 98 81.6
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 5.8e-39 165.2 173 53.2
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 7.6e-39 164.9 202 50.5
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 7.6e-39 164.9 207 47.3
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 9.9e-39 164.5 119 66.4
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.7e-38 163.7 147 59.2
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 3.8e-38 162.5 203 49.3
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 3.8e-38 162.5 209 48.3
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 1.9e-37 160.2 193 50.8
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 3.2e-37 159.5 207 48.3
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 9.3e-37 157.9 207 47.3
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.6e-36 157.1 202 48.0
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 2.1e-36 156.8 207 46.9
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 2.1e-36 156.8 207 46.9
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.7e-35 153.7 123 64.2
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 3.3e-34 149.4 102 73.5
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.8e-33 145.6 193 47.2
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 8.1e-33 144.8 123 62.6
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.4e-32 144.1 112 65.2
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 4.2e-29 132.5 84 76.2
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 4.2e-29 132.5 84 76.2
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 1.8e-27 127.1 156 53.8
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 2.5e-26 123.2 81 71.6
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.8e-25 119.8 114 56.1
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 9.0e-24 114.8 126 54.8
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 4.5e-23 112.5 89 69.7
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 8.4e-22 108.2 166 42.2
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.5e-15 87.4 235 32.8
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 3.4e-15 86.3 116 41.4
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 7.9e-12 75.1 80 47.5
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.0e-11 73.2 109 37.6
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 2.5e-10 70.1 40 80.0
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 5.3e-08 62.4 43 65.1


User provided reference genes

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