Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 5.0e-216 754.2 392 100.0
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 9.8e-156 553.9 385 75.3
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 2.5e-151 539.3 400 75.2
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 9.5e-151 537.3 362 77.9
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 9.5e-151 537.3 362 77.9
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 2.3e-149 532.7 352 77.3
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 3.1e-149 532.3 399 71.4
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 6.8e-149 531.2 356 77.8
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 6.8e-149 531.2 391 72.6
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 1.2e-148 530.4 403 73.0
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 2.9e-147 525.8 387 72.6
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 2.9e-147 525.8 362 77.3
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 1.4e-146 523.5 368 75.5
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 1.2e-145 520.4 375 73.6
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 1.6e-145 520.0 358 77.4
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 2.7e-145 519.2 393 70.7
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 2.7e-145 519.2 359 75.2
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 3.5e-145 518.8 343 78.1
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 4.6e-145 518.5 394 69.8
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 4.6e-145 518.5 355 76.6
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 1.0e-144 517.3 393 69.5
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.7e-144 516.5 395 70.9
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 3.0e-144 515.8 400 71.5
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.0e-144 515.8 378 71.7
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 3.0e-144 515.8 374 73.8
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 3.9e-144 515.4 362 72.9
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 1.5e-143 513.5 362 73.8
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 1.5e-143 513.5 362 73.8
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 1.9e-143 513.1 393 69.2
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 3.3e-143 512.3 390 72.6
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 4.3e-143 511.9 355 75.5
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 7.3e-143 511.1 362 73.2
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 7.3e-143 511.1 366 73.8
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 9.6e-143 510.8 402 69.4
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 1.2e-142 510.4 362 73.2
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 1.2e-142 510.4 361 74.5
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 1.6e-142 510.0 362 73.2
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 1.6e-142 510.0 349 75.9
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 2.8e-142 509.2 343 76.1
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 4.7e-142 508.4 390 70.3
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 6.2e-142 508.1 362 72.7
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 6.2e-142 508.1 363 73.6
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 6.2e-142 508.1 364 73.9
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 6.2e-142 508.1 383 72.8
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 8.1e-142 507.7 355 74.6
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 8.1e-142 507.7 376 71.3
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 8.1e-142 507.7 376 71.3
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.4e-141 506.9 390 70.0
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 5.2e-141 505.0 390 72.3
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 8.9e-141 504.2 355 73.8
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 1.5e-140 503.4 347 75.8
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 1.5e-140 503.4 370 73.2
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 2.6e-140 502.7 347 75.2
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 5.8e-140 501.5 395 68.9
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 9.9e-140 500.7 359 73.5
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 1.7e-139 500.0 410 67.1
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 2.2e-139 499.6 378 70.9
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 2.2e-139 499.6 335 76.7
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 3.8e-139 498.8 343 74.9
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 4.9e-139 498.4 364 71.7
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 1.4e-138 496.9 384 70.8
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.4e-138 496.9 391 69.8
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 7.1e-138 494.6 365 72.9
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 1.7e-136 490.0 359 73.0
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 2.3e-136 489.6 352 74.1
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 3.9e-136 488.8 361 73.1
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 5.1e-136 488.4 374 70.6
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.1e-135 487.3 301 85.0
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 1.9e-135 486.5 349 73.1
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 6.2e-134 481.5 398 66.6
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 4.5e-132 475.3 414 64.5
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 5.8e-132 474.9 342 73.4
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 1.7e-131 473.4 373 69.4
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 2.9e-131 472.6 355 71.8
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 8.4e-131 471.1 334 76.0
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 1.1e-130 470.7 371 70.4
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 1.4e-130 470.3 347 73.8
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 9.3e-130 467.6 396 67.2
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 1.6e-129 466.8 342 72.5
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 1.8e-128 463.4 320 74.7
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 3.3e-127 459.1 309 79.0
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 7.4e-127 458.0 320 72.8
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 9.6e-127 457.6 342 71.3
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 1.3e-126 457.2 353 70.0
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 1.6e-126 456.8 296 79.7
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 1.4e-125 453.8 345 71.9
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 1.8e-125 453.4 342 68.4
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 4.0e-125 452.2 387 63.8
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 1.1e-122 444.1 450 60.9
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 1.9e-122 443.4 335 67.8
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 9.6e-119 431.0 324 71.0
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 1.6e-113 413.7 311 71.4
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 1.3e-110 404.1 303 68.6
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 5.5e-106 388.7 350 62.0
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 1.5e-100 370.5 379 55.7
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.0e-96 357.8 239 76.6
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 2.1e-81 307.0 348 48.3
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 3.0e-80 303.1 286 59.8
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 4.1e-77 292.7 316 49.7
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 2.7e-76 290.0 295 60.3
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 2.2e-75 287.0 237 65.4
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 1.5e-74 284.3 332 47.3
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.5e-74 284.3 201 70.6
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 1.0e-72 278.1 281 59.4
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 4.0e-72 276.2 425 43.3
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 2.4e-69 266.9 236 57.6
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 1.2e-65 254.6 900 28.1
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 3.4e-63 246.5 158 79.1
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 3.5e-60 236.5 472 37.5
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 7.8e-52 208.8 143 76.2
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 7.8e-52 208.8 157 72.0
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 6.0e-44 182.6 128 74.2
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.1e-40 171.8 99 91.9
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 1.5e-34 151.4 325 33.2
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 4.3e-34 149.8 177 50.3
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.3e-22 111.7 82 69.5
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 1.9e-13 81.3 81 58.0
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 4.2e-13 80.1 45 86.7
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 4.2e-13 80.1 48 81.2
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 4.6e-12 76.6 49 73.5
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 6.0e-12 76.3 258 27.5
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 7.9e-12 75.9 271 27.3
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 3.1e-08 63.9 74 54.1
arahy.Tifrunner.gnm1.ann1.63F50L Arachis hypogaea HOM05D000300 ORTHO05D000383 8.4e-06 55.8 50 64.0


User provided reference genes

Program Settings