Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.8e-125 452.6 224 100.0
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 2.7e-89 332.4 219 70.8
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 8.6e-88 327.4 214 74.3
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 8.6e-88 327.4 214 72.4
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.3e-87 325.1 214 73.8
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 3.6e-86 322.0 214 72.0
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 8.0e-86 320.9 213 70.4
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.8e-85 319.7 217 69.6
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 5.2e-85 318.2 214 72.0
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 5.2e-85 318.2 217 67.7
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 8.9e-85 317.4 217 66.8
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 1.2e-84 317.0 218 67.9
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.5e-84 316.6 221 67.4
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 2.0e-84 316.2 221 67.9
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 2.6e-84 315.8 222 68.0
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 3.4e-84 315.5 213 70.0
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 4.4e-84 315.1 222 68.0
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 5.7e-84 314.7 220 65.9
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.3e-83 313.5 222 67.6
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 2.9e-83 312.4 214 68.7
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 8.3e-83 310.8 215 66.0
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.1e-82 310.5 215 67.0
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.1e-82 310.5 214 66.8
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 1.4e-82 310.1 214 69.6
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.4e-82 310.1 215 67.0
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 1.8e-82 309.7 214 67.8
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 1.8e-82 309.7 215 67.0
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 2.4e-82 309.3 215 67.9
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 4.1e-82 308.5 224 65.6
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 7.0e-82 307.8 213 68.5
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.6e-81 306.6 213 66.7
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 2.0e-81 306.2 214 67.3
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 2.0e-81 306.2 214 69.2
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 4.6e-81 305.1 223 64.6
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 4.6e-81 305.1 215 67.9
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 5.9e-81 304.7 211 65.4
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 7.8e-81 304.3 215 65.1
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 1.0e-80 303.9 216 67.6
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.3e-80 303.5 214 65.4
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.7e-80 303.1 214 65.4
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 6.6e-80 301.2 216 66.2
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 6.6e-80 301.2 216 66.2
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.9e-79 299.7 218 65.6
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 3.3e-79 298.9 216 65.7
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.6e-78 296.6 216 67.6
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 4.7e-78 295.0 224 63.4
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 4.7e-78 295.0 224 63.4
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.0e-77 293.9 216 63.9
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 1.8e-77 293.1 213 65.7
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.3e-77 292.7 216 64.4
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 3.1e-77 292.4 216 61.6
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 8.9e-77 290.8 213 65.7
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 8.9e-77 290.8 213 64.8
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 2.0e-76 289.7 214 62.6
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 3.4e-76 288.9 213 64.8
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 5.8e-76 288.1 210 64.3
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 7.5e-76 287.7 213 64.3
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 9.8e-76 287.3 224 61.6
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-75 287.0 213 64.8
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.3e-75 287.0 215 64.2
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 1.3e-75 287.0 210 64.8
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.2e-75 286.2 194 69.6
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 3.7e-75 285.4 214 64.5
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 4.9e-75 285.0 213 64.3
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 4.9e-75 285.0 213 64.3
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 6.4e-75 284.6 214 61.7
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 8.3e-75 284.3 218 62.4
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 2.4e-74 282.7 211 62.6
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 2.4e-74 282.7 207 62.8
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 4.1e-74 282.0 213 62.9
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 5.4e-74 281.6 216 62.0
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 7.0e-74 281.2 216 61.6
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 6.0e-73 278.1 206 64.1
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.0e-72 277.3 213 59.6
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.3e-72 276.9 204 64.7
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.7e-72 276.6 211 59.7
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.3e-72 276.2 206 61.2
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 5.0e-72 275.0 219 60.7
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 5.0e-72 275.0 215 60.0
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 6.6e-72 274.6 203 64.0
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 1.1e-71 273.9 219 60.3
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.5e-71 273.5 207 60.9
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.9e-71 273.1 206 61.7
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 4.3e-71 271.9 214 59.3
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 5.6e-71 271.6 206 61.7
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 1.2e-70 270.4 214 62.6
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 2.1e-70 269.6 214 59.8
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.8e-70 269.2 273 51.3
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.6e-70 268.9 216 58.3
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.1e-69 267.3 215 57.7
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 2.3e-69 266.2 207 58.0
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 5.2e-69 265.0 207 59.4
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 1.2e-68 263.8 203 59.1
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 3.4e-68 262.3 214 57.5
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 3.4e-68 262.3 172 69.2
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 4.9e-67 258.5 203 58.6
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.9e-66 256.5 214 57.0
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 5.4e-66 255.0 203 60.1
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 5.4e-66 255.0 203 60.1
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 2.7e-65 252.7 183 66.7
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.7e-65 252.7 203 55.7
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 7.8e-65 251.1 192 62.0
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.3e-64 250.4 208 56.7
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.7e-64 250.0 193 62.7
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 2.3e-64 249.6 213 58.7
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 6.6e-64 248.1 213 54.0
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.2e-62 243.8 213 58.2
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.3e-61 239.6 164 68.3
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 5.2e-61 238.4 211 53.6
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 8.9e-61 237.7 156 70.5
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 1.7e-59 233.4 215 55.8
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 1.1e-58 230.7 211 54.0
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 4.1e-58 228.8 172 62.8
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 7.1e-58 228.0 201 58.2
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 2.7e-57 226.1 198 55.6
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 7.8e-57 224.6 169 61.5
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 6.6e-56 221.5 176 58.5
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 1.5e-55 220.3 223 47.1
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 5.6e-55 218.4 168 57.7
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 2.1e-54 216.5 150 66.7
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 4.7e-54 215.3 211 48.8
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.4e-53 213.8 202 51.5
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.4e-53 213.8 213 48.8
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.8e-53 213.4 213 48.8
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.0e-52 209.9 147 67.3
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.0e-52 209.9 206 47.6
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 4.4e-52 208.8 214 53.3
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 2.2e-51 206.5 155 63.2
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.9e-51 205.3 206 47.6
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 8.4e-51 204.5 201 51.2
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 5.4e-50 201.8 214 51.4
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 1.3e-48 197.2 204 52.0
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 1.6e-46 190.3 202 43.6
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.9e-43 178.7 148 54.7
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 6.4e-43 178.3 207 41.1
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-42 177.6 204 48.0
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 4.3e-39 165.6 157 52.2
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.1e-38 163.3 203 43.3
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.4e-37 159.8 203 43.3
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.2e-35 153.3 123 61.0
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 8.4e-35 151.4 202 37.1
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 4.2e-34 149.1 95 70.5
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 3.5e-33 146.0 103 68.9
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.1e-31 141.0 213 37.6
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 6.2e-30 135.2 96 65.6
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 2.6e-28 129.8 115 52.2
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 4.5e-28 129.0 131 49.6
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 7.6e-28 128.3 203 36.0
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 3.8e-27 125.9 203 35.5
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.9e-26 123.6 90 66.7
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.0e-24 116.3 177 41.8
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.2e-20 104.4 82 57.3
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.0e-20 103.6 81 56.8
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 1.6e-17 94.0 209 34.4
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.3e-14 84.3 68 60.3
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.7e-14 82.8 84 51.2
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 7.9e-09 65.1 42 76.2
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 8.2e-06 55.1 51 54.9


User provided reference genes

Program Settings