Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g15870 Coffea canephora HOM05D007112 ORTHO05D008930 4.1e-144 514.6 244 100.0
Dinv28792 Davidia involucrata HOM05D007112 ORTHO05D008930 5.3e-75 285.0 237 57.4
Oeu013523.1 Olea europaea HOM05D007112 ORTHO05D008930 1.8e-70 270.0 236 60.6
Nitab4.5_0000038g0350 Nicotiana tabacum HOM05D007112 ORTHO05D008930 1.5e-69 266.9 240 53.8
Nitab4.5_0010469g0020 Nicotiana tabacum HOM05D007112 ORTHO05D008930 2.0e-69 266.5 240 53.3
Migut.D00774 Erythranthe guttata HOM05D007112 ORTHO05D008930 2.6e-69 266.2 224 56.7
MSTRG.18505 Avicennia marina HOM05D007112 ORTHO05D008930 3.3e-69 265.8 233 55.4
Peaxi162Scf02239g00022 Petunia axillaris HOM05D007112 ORTHO05D008930 4.4e-69 265.4 238 54.2
Solyc09g047840.3 Solanum lycopersicum HOM05D007112 ORTHO05D008930 7.4e-69 264.6 234 55.6
Sopen09g015950 Solanum pennellii HOM05D007112 ORTHO05D008930 4.8e-68 261.9 234 55.1
Atru.chr6.3529 Acer truncatum HOM05D007112 ORTHO05D008930 1.4e-67 260.4 230 53.9
PGSC0003DMG400021909 Solanum tuberosum HOM05D007112 ORTHO05D008930 4.1e-67 258.8 225 56.0
Ciclev10016325m.g Citrus clementina HOM05D007112 ORTHO05D008930 7.0e-67 258.1 230 54.3
Hma1.2p1_1043F.1_g251280 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 2.0e-66 256.5 238 52.9
SalBow3G4154 Salvia bowleyana HOM05D007112 ORTHO05D008930 4.5e-66 255.4 232 53.0
Rhsim01G0247600 Rhododendron simsii HOM05D007112 ORTHO05D008930 1.0e-65 254.2 230 57.0
Lj2A1111T23 Lonicera japonica HOM05D007112 ORTHO05D008930 6.5e-65 251.5 232 56.0
GSVIVG01001529001 Vitis vinifera HOM05D007112 ORTHO05D008930 2.1e-63 246.5 231 51.9
arahy.Tifrunner.gnm1.ann1.T2R7SH Arachis hypogaea HOM05D007112 ORTHO05D008930 8.0e-63 244.6 232 52.2
vmacro14688 Vaccinium macrocarpon HOM05D007112 ORTHO05D008930 1.4e-62 243.8 213 56.8
CSS0005940 Camellia sinensis var. sinensis HOM05D007112 ORTHO05D008930 2.3e-62 243.0 240 52.5
TAR362G0557 Trochodendron aralioides HOM05D007112 ORTHO05D008930 3.0e-62 242.7 233 51.1
Actinidia23803 Actinidia chinensis HOM05D007112 ORTHO05D008930 1.5e-61 240.4 236 51.3
FAN15G3611 Fragaria x ananassa HOM05D007112 ORTHO05D008930 9.7e-61 237.7 230 50.4
RcHm_v2.0_Chr6g0282211 Rosa chinensis HOM05D007112 ORTHO05D008930 2.2e-60 236.5 230 50.0
Duzib133G1446 Durio zibethinus HOM05D007112 ORTHO05D008930 4.8e-60 235.3 230 49.6
Sabra14G0134200 Salix brachista HOM05D007112 ORTHO05D008930 1.1e-59 234.2 237 48.9
LjContig00389g0002281 Lotus japonicus HOM05D007112 ORTHO05D008930 1.4e-59 233.8 235 48.9
FvH4_2g17490 Fragaria vesca HOM05D007112 ORTHO05D008930 4.1e-59 232.3 230 49.1
Gorai.001G227200 Gossypium raimondii HOM05D007112 ORTHO05D008930 4.1e-59 232.3 229 49.8
Thecc.01G207600 Theobroma cacao HOM05D007112 ORTHO05D008930 5.3e-59 231.9 234 48.3
CsaV3_7G026720 Cucumis sativus L. HOM05D007112 ORTHO05D008930 7.0e-59 231.5 237 46.4
TWI36G0064 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 7.0e-59 231.5 229 48.9
Gohir.A07G195600 Gossypium hirsutum HOM05D007112 ORTHO05D008930 9.1e-59 231.1 229 49.3
MD05G1153700 Malus domestica HOM05D007112 ORTHO05D008930 1.2e-58 230.7 232 47.8
Prupe.8G187100 Prunus persica HOM05D007112 ORTHO05D008930 1.2e-58 230.7 235 48.5
Eucgr.K02360 Eucalyptus grandis HOM05D007112 ORTHO05D008930 1.6e-58 230.3 231 49.8
VMungo0331G1777 Vigna mungo HOM05D007112 ORTHO05D008930 2.0e-58 229.9 231 48.1
Lalb_Chr07g0194661 Lupinus albus HOM05D007112 ORTHO05D008930 4.5e-58 228.8 234 48.3
Glyma.03G097000 Glycine max HOM05D007112 ORTHO05D008930 5.9e-58 228.4 231 46.8
THA.LOC104819012 Tarenaya hassleriana HOM05D007112 ORTHO05D008930 1.0e-57 227.6 233 46.8
Cfa017735 Carpinus fangiana HOM05D007112 ORTHO05D008930 1.7e-57 226.9 232 49.6
COL.COLO4_34270 Corchorus olitorius HOM05D007112 ORTHO05D008930 2.9e-57 226.1 230 48.7
Gohir.D07G202200 Gossypium hirsutum HOM05D007112 ORTHO05D008930 2.9e-57 226.1 229 48.9
HanXRQChr08g0231791 Helianthus annuus HOM05D007112 ORTHO05D008930 6.5e-57 224.9 227 47.6
unitig_60.g25572 Utricularia gibba HOM05D007112 ORTHO05D008930 1.5e-56 223.8 225 52.0
CANSAT01G1474 Cannabis sativa HOM05D007112 ORTHO05D008930 9.4e-56 221.1 239 48.1
Phvul.010G036300 Phaseolus vulgaris HOM05D007112 ORTHO05D008930 9.4e-56 221.1 234 47.0
Hund02806 Selenicereus undatus HOM05D007112 ORTHO05D008930 1.6e-55 220.3 239 47.3
TPR.G17379 Trifolium pratense HOM05D007112 ORTHO05D008930 1.0e-54 217.6 225 49.8
A05p40690 Brassica napus HOM05D007112 ORTHO05D008930 1.4e-54 217.2 225 47.6
BraA05t22800Z Brassica rapa HOM05D007112 ORTHO05D008930 2.3e-54 216.5 223 47.1
PSO675G4719 Papaver somniferum HOM05D007112 ORTHO05D008930 3.0e-54 216.1 251 45.8
ECA247G2139 Erigeron canadensis HOM05D000092 ORTHO05D008930 5.2e-54 215.3 230 50.0
Glyma.07G124300 Glycine max HOM05D007112 ORTHO05D008930 5.2e-54 215.3 236 44.9
ClCG09G008370 Citrullus lanatus HOM05D007112 ORTHO05D008930 8.8e-54 214.5 234 44.9
arahy.Tifrunner.gnm1.ann1.X2Q8CL Arachis hypogaea HOM05D007112 ORTHO05D008930 1.5e-53 213.8 232 47.8
Medtr8g010140 Medicago truncatula HOM05D007112 ORTHO05D008930 1.5e-53 213.8 232 45.7
BcaC05g29544 Brassica carinata HOM05D007112 ORTHO05D008930 2.6e-53 213.0 228 47.4
CARHR082180 Cardamine hirsuta HOM05D007112 ORTHO05D008930 2.6e-53 213.0 229 47.6
QL05p089159 Quercus lobata HOM05D007112 ORTHO05D008930 3.3e-53 212.6 231 48.5
Aa31LG5G18060 Aethionema arabicum HOM05D007112 ORTHO05D008930 4.4e-53 212.2 228 46.1
Lsat_1_v5_gn_9_16901 Lactuca sativa HOM05D007112 ORTHO05D008930 4.4e-53 212.2 230 47.0
Sed0011312 Sechium edule HOM05D007112 ORTHO05D008930 7.5e-53 211.5 226 46.5
Carub.0003s0707 Capsella rubella HOM05D007112 ORTHO05D008930 9.7e-53 211.1 225 46.7
Psat4g208280 Pisum sativum HOM05D007112 ORTHO05D008930 1.3e-52 210.7 232 47.8
PSO732G0401 Papaver somniferum HOM05D007112 ORTHO05D008930 1.7e-52 210.3 250 44.0
AUR62028645 Chenopodium quinoa HOM05D007112 ORTHO05D008930 2.8e-52 209.5 232 47.8
Ca_23159_v3 Cicer arietinum L. HOM05D007112 ORTHO05D008930 4.8e-52 208.8 227 46.3
Thhalv10022158m.g Eutrema salsugineum HOM05D007112 ORTHO05D008930 4.8e-52 208.8 226 46.0
FAN24G0137 Fragaria x ananassa HOM05D007112 ORTHO05D008930 4.8e-52 208.8 236 47.0
BolC5t34634H Brassica oleracea HOM05D007112 ORTHO05D008930 2.4e-51 206.5 225 46.2
Sp3g06430 Schrenkiella parvula HOM05D007112 ORTHO05D008930 7.0e-51 204.9 224 45.5
Aqoxy5G04050 Aquilegia oxysepala HOM05D007112 ORTHO05D008930 1.2e-50 204.1 229 45.0
AT3G07525 Arabidopsis thaliana HOM05D007112 ORTHO05D008930 1.2e-50 204.1 224 45.1
PGR044G1116 Punica granatum HOM05D007112 ORTHO05D008930 1.6e-50 203.8 233 45.5
AUR62008068 Chenopodium quinoa HOM05D007112 ORTHO05D008930 3.5e-50 202.6 232 47.0
CiPaw.14G038400 Carya illinoinensis HOM05D007112 ORTHO05D008930 4.5e-50 202.2 194 53.1
Sc24g0003360 Simmondsia chinensis HOM05D007112 ORTHO05D008930 1.3e-49 200.7 237 43.9
Hma1.2p1_1043F.1_g251290 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 2.9e-49 199.5 141 63.1
C05p59800 Brassica napus HOM05D007112 ORTHO05D008930 5.0e-49 198.7 225 45.8
SHI30551 Sapria himalayana HOM05D007112 ORTHO05D008930 6.5e-49 198.4 233 41.6
ATR0752G208 Amborella trichopoda HOM05D007112 ORTHO05D008930 4.2e-48 195.7 223 42.6
Manes.13G056200 Manihot esculenta HOM05D007112 ORTHO05D008930 4.2e-48 195.7 148 60.1
Nn7g37436 Nelumbo nucifera HOM05D007112 ORTHO05D008930 5.2e-46 188.7 153 56.9
HPP92_001291 Vanilla planifolia HOM05D007112 ORTHO05D008930 6.3e-44 181.8 232 43.5
Zm00001eb425740 Zea mays HOM05D007112 ORTHO05D008930 2.7e-42 176.4 232 42.7
MELO3C021125.2 Cucumis melo HOM05D007112 ORTHO05D008930 2.3e-41 173.3 141 52.5
CAN.G50.11 Capsicum annuum HOM05D007112 ORTHO05D008930 1.8e-38 163.7 117 61.5
MBI10_g35388_MAGBIO Magnolia biondii HOM05D007112 ORTHO05D008930 1.7e-36 157.1 257 37.4
CDE05G1497 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 3.7e-36 156.0 147 48.3
Ah.11g050810 Amaranthus hybridus HOM05D007112 ORTHO05D008930 4.9e-36 155.6 233 38.2
DCAR_018609 Daucus carota HOM05D007112 ORTHO05D008930 1.1e-35 154.5 164 49.4
Os04g0497350 Oryza sativa ssp. japonica HOM05D007112 ORTHO05D008930 7.0e-35 151.8 221 38.0
HanXRQChr03g0082541 Helianthus annuus HOM05D007112 ORTHO05D008930 5.0e-33 145.6 108 60.2
Pp3c26_2050 Physcomitrium patens HOM05D007112 ORTHO05D008930 2.9e-28 129.8 194 38.7
AagrBONN_evm.TU.Sc2ySwM_344.2017 Anthoceros agrestis HOM05D007112 ORTHO05D008930 1.2e-26 124.4 195 34.9
Mapoly0002s0314 Marchantia polymorpha HOM05D007112 ORTHO05D008930 1.6e-26 124.0 186 37.1
Cpa.g.sc8.40 Carica papaya HOM05D007112 ORTHO05D008930 2.3e-25 120.2 137 46.0
SGA_v2.0_scaffold29G12307 Striga asiatica HOM05D007112 ORTHO05D008930 7.3e-24 115.2 152 42.1
MD10G1148000 Malus domestica HOM05D007112 ORTHO05D008930 4.6e-18 95.9 133 36.8
Haze_03375 Corylus avellana HOM05D007112 ORTHO05D008930 1.3e-17 94.4 64 60.9
EL10Ac5g10586 Beta vulgaris HOM05D007112 ORTHO05D008930 1.1e-16 91.3 85 49.4
SMO141G0021 Selaginella moellendorffii HOM05D007112 ORTHO05D008930 5.6e-16 89.0 113 38.1
CDE05G2169 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 2.1e-15 87.0 140 38.6
EL10Ac5g10588 Beta vulgaris HOM05D007112 ORTHO05D008930 2.6e-13 80.1 62 56.5
Haze_03374 Corylus avellana HOM05D000072 ORTHO05D000026 3.2e-11 73.2 114 39.5
Haze_03371 Corylus avellana HOM05D007112 ORTHO05D008930 2.7e-10 70.1 110 40.0
C04p34930 Brassica napus HOM05D007112 ORTHO05D008930 1.8e-06 57.4 110 33.6


User provided reference genes

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