Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 9.5e-89 330.5 211 100.0
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 7.4e-57 224.6 209 67.0
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 8.1e-56 221.1 213 61.0
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 1.4e-55 220.3 213 66.7
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 6.9e-55 218.0 209 66.5
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.5e-54 215.3 213 58.2
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 4.5e-54 215.3 213 58.2
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 1.0e-53 214.2 209 59.3
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 3.2e-52 209.1 230 56.5
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 5.5e-52 208.4 210 58.6
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 5.5e-52 208.4 207 58.5
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 9.3e-52 207.6 211 59.7
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 1.2e-51 207.2 172 64.0
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 1.6e-51 206.8 208 59.6
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 3.5e-51 205.7 174 61.5
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 4.6e-51 205.3 209 59.8
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 7.9e-51 204.5 226 64.2
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 7.9e-51 204.5 209 63.6
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 2.3e-50 203.0 219 60.3
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 2.3e-50 203.0 196 59.2
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.0e-50 202.6 207 59.4
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 3.9e-50 202.2 209 56.0
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 8.7e-50 201.1 211 60.7
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 1.1e-49 200.7 216 59.3
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 2.5e-49 199.5 187 65.2
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 3.3e-49 199.1 209 61.2
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 3.3e-49 199.1 213 65.3
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 4.3e-49 198.7 226 57.1
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 1.3e-48 197.2 215 60.9
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 1.6e-48 196.8 217 64.1
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 1.6e-48 196.8 224 63.8
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 2.1e-48 196.4 208 59.1
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 8.2e-48 194.5 215 54.4
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 3.1e-47 192.6 174 69.5
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 4.1e-47 192.2 213 62.0
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 4.1e-47 192.2 232 57.8
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 5.3e-47 191.8 220 60.0
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 9.0e-47 191.0 215 64.7
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 1.2e-46 190.7 179 55.9
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 2.0e-46 189.9 213 51.6
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 2.0e-46 189.9 203 57.1
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 2.6e-46 189.5 169 59.2
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 2.6e-46 189.5 209 51.7
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 3.4e-46 189.1 166 65.1
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 3.4e-46 189.1 206 53.4
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 3.4e-46 189.1 112 80.4
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 4.5e-46 188.7 112 81.2
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 4.5e-46 188.7 216 60.6
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 7.6e-46 188.0 198 53.0
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 7.6e-46 188.0 141 72.3
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 1.0e-45 187.6 177 63.3
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.2e-45 186.4 182 54.4
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 5.0e-45 185.3 207 51.2
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 6.5e-45 184.9 217 60.4
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 6.5e-45 184.9 218 53.7
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.1e-44 184.1 203 54.2
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 1.1e-44 184.1 218 52.8
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.5e-44 183.0 178 62.4
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 4.2e-44 182.2 187 53.5
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 4.2e-44 182.2 182 61.5
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 7.1e-44 181.4 216 51.4
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 7.1e-44 181.4 220 58.6
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 1.2e-43 180.6 205 57.6
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.2e-43 180.6 182 56.0
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 1.2e-43 180.6 171 57.3
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.6e-43 180.3 218 58.3
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 7.9e-43 177.9 211 48.8
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 7.9e-43 177.9 110 74.5
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 7.9e-43 177.9 166 59.6
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 1.0e-42 177.6 200 59.0
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 1.0e-42 177.6 203 59.1
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 1.0e-42 177.6 220 53.6
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 1.8e-42 176.8 196 54.6
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 1.8e-42 176.8 182 61.5
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 2.3e-42 176.4 112 74.1
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 2.3e-42 176.4 112 74.1
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 3.0e-42 176.0 112 74.1
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 3.0e-42 176.0 112 73.2
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 3.0e-42 176.0 203 51.7
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 3.9e-42 175.6 211 51.2
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 3.9e-42 175.6 208 58.2
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 5.1e-42 175.3 211 50.7
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 5.1e-42 175.3 202 50.5
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 6.7e-42 174.9 215 58.6
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 8.7e-42 174.5 206 54.9
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 8.7e-42 174.5 112 73.2
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 8.7e-42 174.5 112 73.2
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 1.5e-41 173.7 112 73.2
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 1.5e-41 173.7 112 72.3
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 1.5e-41 173.7 166 53.6
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 1.9e-41 173.3 209 49.3
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 1.9e-41 173.3 206 48.5
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 2.5e-41 172.9 108 76.9
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 3.3e-41 172.6 211 49.3
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 9.7e-41 171.0 109 75.2
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 3.7e-40 169.1 209 46.4
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 4.8e-40 168.7 110 67.3
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 1.1e-39 167.5 106 76.4
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.8e-39 166.8 100 78.0
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 4.1e-39 165.6 210 51.9
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 5.3e-39 165.2 106 68.9
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 1.6e-35 153.7 231 46.3
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 3.6e-35 152.5 221 52.5
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.8e-34 150.2 186 50.5
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 3.3e-33 146.0 88 78.4
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.5e-30 137.1 112 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 1.3e-29 134.0 108 55.6
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 5.5e-28 128.6 108 57.4
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 2.1e-27 126.7 112 58.0
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 5.1e-26 122.1 101 54.5
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 2.0e-25 120.2 106 52.8
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 5.7e-17 92.0 155 42.6
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 2.2e-16 90.1 167 51.5
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 3.7e-16 89.4 72 56.9
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 8.0e-11 71.6 142 39.4
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 2.8e-08 63.2 148 44.6
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 7.7e-06 55.1 39 64.1


User provided reference genes

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