Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1302.7 711 100.0
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1122.8 648 95.8
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.2e-272 941.0 652 79.1
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 2.6e-271 938.7 649 77.0
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 7.5e-271 937.2 648 78.1
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 7.8e-268 927.2 649 76.0
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 2.3e-267 925.6 653 76.9
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 3.3e-266 921.8 649 75.3
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 9.5e-266 920.2 649 77.0
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 2.1e-265 919.1 650 76.8
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 1.5e-263 912.9 653 73.7
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 1.3e-262 909.8 651 76.8
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 3.7e-262 908.3 650 76.8
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.1e-261 906.7 652 75.5
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 7.0e-261 904.0 654 75.1
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 2.0e-260 902.5 671 71.7
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 3.5e-260 901.7 651 74.0
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 4.6e-260 901.4 651 75.1
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 1.0e-259 900.2 649 72.4
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.3e-259 899.8 651 74.3
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.7e-259 899.4 655 75.7
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 1.5e-258 896.3 657 74.6
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 5.6e-258 894.4 651 72.7
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 1.2e-257 893.3 651 72.7
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 1.6e-257 892.9 651 72.7
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 8.0e-257 890.6 650 74.6
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 1.8e-256 889.4 651 72.2
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 4.0e-256 888.3 651 71.4
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 5.8e-255 884.4 671 69.7
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.3e-254 883.2 650 74.2
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 2.2e-254 882.5 651 74.3
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 6.4e-254 880.9 650 71.5
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 8.3e-254 880.6 648 74.4
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 1.9e-253 879.4 650 73.8
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 1.9e-253 879.4 651 73.6
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 2.4e-253 879.0 650 73.7
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 5.4e-253 877.9 649 71.5
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 7.1e-253 877.5 684 72.1
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 9.2e-253 877.1 671 72.0
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 6.0e-252 874.4 652 70.9
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 1.7e-251 872.8 649 74.4
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.0e-251 872.1 671 69.3
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 3.9e-251 871.7 671 69.3
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 3.9e-251 871.7 650 70.9
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 6.6e-251 870.9 671 69.3
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 1.1e-250 870.2 650 73.2
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 2.5e-250 869.0 654 70.2
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 4.3e-250 868.2 671 69.2
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 4.3e-250 868.2 651 73.3
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 5.6e-250 867.8 652 73.8
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 7.3e-250 867.5 614 77.7
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 3.6e-249 865.1 649 71.0
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 3.1e-248 862.1 653 72.1
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 4.0e-248 861.7 662 69.3
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 5.2e-248 861.3 650 72.5
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 3.4e-247 858.6 671 68.1
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 4.4e-247 858.2 673 70.7
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 5.8e-247 857.8 651 69.9
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 2.9e-246 855.5 671 67.1
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 6.4e-246 854.4 649 68.7
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 5.4e-245 851.3 650 69.2
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 9.2e-245 850.5 673 67.6
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 4.6e-244 848.2 681 67.1
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.0e-244 847.8 673 67.5
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 7.8e-244 847.4 616 76.0
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.5e-242 843.2 650 68.2
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 2.8e-241 839.0 650 70.2
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 1.1e-240 837.0 648 70.1
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 2.4e-240 835.9 620 71.1
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 3.1e-240 835.5 718 66.0
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 6.8e-240 834.3 651 67.4
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 1.2e-239 833.6 651 67.0
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 2.0e-239 832.8 652 67.6
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 7.6e-239 830.9 671 66.6
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 9.9e-239 830.5 651 66.8
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 9.9e-239 830.5 651 67.3
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 1.3e-238 830.1 651 67.0
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 2.2e-238 829.3 651 66.7
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 2.9e-238 828.9 651 66.7
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 4.9e-238 828.2 651 66.5
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 4.9e-238 828.2 671 66.0
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.1e-237 827.0 687 67.7
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.4e-237 826.6 651 66.4
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.4e-237 826.6 671 65.7
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 3.2e-237 825.5 651 66.4
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 4.2e-237 825.1 672 68.9
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 7.1e-237 824.3 672 69.5
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 9.3e-237 823.9 672 69.8
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.1e-236 822.8 613 74.1
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 6.0e-236 821.2 650 65.4
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 3.0e-235 818.9 669 67.0
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 3.0e-235 818.9 651 66.4
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 6.6e-235 817.8 650 65.7
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 8.7e-235 817.4 651 66.2
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 1.1e-232 810.4 650 66.3
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.4e-232 810.1 658 66.3
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 1.4e-232 810.1 651 66.2
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 2.0e-231 806.2 652 65.3
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 1.3e-230 803.5 698 62.5
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 2.4e-229 799.3 634 66.1
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 3.2e-229 798.9 651 67.7
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 7.3e-226 787.7 651 65.9
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 2.1e-225 786.2 652 65.8
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 1.4e-224 783.5 671 62.7
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 7.6e-223 777.7 652 63.8
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.4e-221 772.7 541 78.6
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 3.9e-219 765.4 687 61.0
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 4.8e-217 758.4 678 64.0
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 5.8e-215 751.5 699 59.7
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 3.9e-203 712.2 652 60.0
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.5e-199 700.3 674 53.3
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 1.2e-196 690.6 648 57.7
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 4.7e-188 662.1 651 53.1
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.1e-186 657.5 646 55.6
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 2.6e-186 656.4 657 54.5
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.6e-178 629.8 597 56.8
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.7e-177 627.1 416 80.8
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.5e-173 613.2 419 79.7
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 3.0e-171 606.3 430 77.7
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.9e-165 587.0 640 48.3
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 8.0e-156 555.1 443 63.0
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 1.8e-147 527.3 560 56.1
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.1e-144 518.1 347 78.4
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 7.5e-138 495.4 512 50.0
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.2e-127 461.5 459 55.1
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 2.8e-116 423.7 277 81.6
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.3e-108 398.3 346 62.7
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 1.4e-107 394.8 724 34.7
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 4.0e-99 366.7 691 33.6
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 1.0e-97 362.1 291 68.7
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.3e-86 325.1 437 43.9
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 5.7e-85 319.7 661 31.2
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.4e-83 315.1 562 39.7
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 6.9e-83 312.8 265 62.6
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.3e-76 292.0 216 66.7
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 3.1e-75 287.3 362 50.6
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.2e-71 275.4 279 50.9
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.0e-66 258.1 220 60.9
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 6.5e-65 253.1 173 71.1
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 3.2e-64 250.8 219 59.4
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 2.3e-62 244.6 244 55.7
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 4.0e-62 243.8 421 40.9
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 2.0e-58 231.5 200 62.5
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 3.5e-58 230.7 471 36.5
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 9.8e-53 212.6 205 62.0
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.4e-51 208.8 118 83.9
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.0e-50 204.9 123 80.5
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.8e-49 200.7 375 40.3
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 8.0e-47 193.0 136 70.6
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.4e-46 192.2 423 37.1
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 5.4e-43 180.3 408 37.0
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 7.8e-42 176.4 301 40.9
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.4e-35 155.6 124 76.6
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 3.2e-35 154.5 105 76.2
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 5.4e-35 153.7 102 78.4
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.3e-30 138.3 125 64.8
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 4.0e-30 137.5 233 39.9
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 3.7e-28 131.0 135 54.8
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.0e-25 122.9 337 32.9
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 1.7e-25 122.1 105 63.8
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.5e-24 118.2 260 40.4
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.2e-23 115.9 159 42.1
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 2.8e-23 114.8 79 68.4
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 8.1e-23 113.2 74 71.6
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 8.1e-23 113.2 74 71.6
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 1.8e-22 112.1 121 50.4
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 2.3e-22 111.7 90 62.2
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 5.8e-21 107.1 169 44.4
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.1e-19 102.8 134 47.0
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.3e-17 95.9 172 37.8
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.3e-17 95.1 66 71.2
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.6e-17 93.2 67 73.1
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 9.2e-11 73.2 163 34.4


User provided reference genes

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