Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 3.4e-127 458.4 238 100.0
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 6.3e-65 251.5 239 57.3
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.1e-61 240.7 237 57.8
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 4.7e-60 235.3 233 56.7
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 1.2e-58 230.7 241 52.3
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 4.4e-58 228.8 237 55.7
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 3.2e-56 222.6 230 53.9
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 7.0e-56 221.5 233 51.1
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 9.2e-56 221.1 241 50.6
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 1.2e-55 220.7 238 53.8
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 1.6e-55 220.3 245 53.1
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 6.0e-55 218.4 245 48.2
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 1.0e-54 217.6 236 51.3
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 1.0e-54 217.6 237 50.2
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 1.7e-54 216.9 237 50.6
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.0e-54 216.1 241 49.8
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 1.9e-53 213.4 241 49.4
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 2.1e-52 209.9 239 49.8
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 1.1e-51 207.6 233 48.9
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 1.1e-51 207.6 237 46.8
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 1.4e-51 207.2 231 47.2
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 8.9e-51 204.5 228 47.8
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 1.5e-50 203.8 235 50.6
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 3.4e-50 202.6 235 48.5
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 3.4e-50 202.6 296 44.9
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 5.8e-50 201.8 245 51.4
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 7.5e-50 201.4 233 49.4
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 6.4e-49 198.4 236 47.0
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 1.1e-48 197.6 232 47.0
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 1.1e-48 197.6 237 46.4
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 1.9e-48 196.8 235 46.0
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 2.4e-48 196.4 233 46.4
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 2.4e-48 196.4 227 45.8
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 5.4e-48 195.3 295 42.0
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 7.0e-48 194.9 227 46.3
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 2.1e-47 193.4 235 48.1
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 6.0e-47 191.8 245 46.5
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 7.8e-47 191.4 235 46.8
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 1.0e-46 191.0 240 47.5
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 3.9e-46 189.1 242 45.9
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 3.9e-46 189.1 224 48.2
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 5.1e-46 188.7 209 52.6
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 8.6e-46 188.0 194 51.5
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.1e-45 187.6 230 46.1
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 4.3e-45 185.7 226 46.0
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 9.5e-45 184.5 228 45.2
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 9.5e-45 184.5 184 54.3
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 1.6e-44 183.7 230 42.6
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.6e-44 182.6 211 48.3
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 8.1e-44 181.4 218 47.7
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.1e-43 179.5 218 47.2
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 3.1e-43 179.5 186 52.2
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 4.0e-43 179.1 181 50.8
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 6.8e-43 178.3 232 43.1
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 8.9e-43 177.9 164 57.9
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 4.4e-42 175.6 267 44.6
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 2.9e-41 172.9 238 42.9
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.1e-40 171.0 256 41.4
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 1.1e-40 171.0 289 39.1
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 1.4e-40 170.6 237 45.1
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 2.4e-40 169.9 223 43.9
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 7.1e-40 168.3 263 39.9
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 3.5e-39 166.0 343 33.8
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 1.0e-38 164.5 182 53.3
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 1.7e-38 163.7 229 42.8
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 1.5e-37 160.6 231 41.1
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 3.3e-37 159.5 229 41.5
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 1.6e-36 157.1 228 41.7
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 2.1e-36 156.8 228 41.2
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 2.1e-36 156.8 228 41.2
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 2.8e-36 156.4 180 47.2
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 4.7e-36 155.6 224 42.0
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 6.2e-36 155.2 229 41.0
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 6.2e-36 155.2 226 42.5
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 8.1e-36 154.8 150 52.7
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 1.4e-35 154.1 146 54.1
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 1.4e-35 154.1 180 48.3
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 1.8e-35 153.7 228 40.4
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 8.9e-35 151.4 200 44.0
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 4.4e-34 149.1 137 59.9
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 6.4e-33 145.2 252 37.7
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 1.1e-32 144.4 237 40.5
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 1.1e-32 144.4 311 35.4
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 5.4e-32 142.1 117 59.8
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 9.2e-32 141.4 216 40.7
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 1.6e-31 140.6 252 37.3
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 2.1e-31 140.2 249 37.3
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 2.1e-31 140.2 234 37.2
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 1.3e-30 137.5 142 51.4
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 2.1e-28 130.2 179 41.9
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 6.2e-28 128.6 223 38.1
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.8e-27 127.1 213 38.5
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 5.3e-27 125.6 150 47.3
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 2.0e-26 123.6 188 39.4
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 9.9e-26 121.3 181 41.4
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 3.8e-25 119.4 185 41.6
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 2.7e-23 113.2 137 48.2
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 1.3e-20 104.4 207 30.9
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 3.6e-20 102.8 122 43.4
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.1e-19 101.3 122 42.6
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 3.2e-08 63.2 53 56.6
TPR.G22099 Trifolium pratense HOM05D007204 ORTHO05D008593 5.5e-08 62.4 118 36.4


User provided reference genes

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