Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 9.5e-243 843.2 457 100.0
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 7.2e-57 225.7 433 40.2
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 2.7e-56 223.8 468 39.3
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 9.1e-52 208.8 420 38.6
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.0e-50 205.3 438 37.7
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.5e-49 199.5 452 37.8
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 7.9e-48 195.7 450 37.3
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 6.7e-47 192.6 479 37.6
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 4.4e-46 189.9 436 36.5
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 7.0e-44 182.6 473 35.5
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 2.0e-43 181.0 442 35.7
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.6e-43 180.6 457 37.6
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 7.7e-43 179.1 467 36.2
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 6.5e-42 176.0 444 36.5
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 6.1e-40 169.5 339 39.2
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.9e-39 166.8 469 35.0
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 6.7e-39 166.0 462 37.0
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 8.8e-39 165.6 437 36.2
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.6e-38 164.1 463 35.0
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 7.4e-38 162.5 472 33.5
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 9.7e-38 162.2 461 34.9
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 2.8e-37 160.6 434 34.3
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 2.8e-37 160.6 472 34.1
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 4.8e-37 159.8 465 34.6
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 6.3e-37 159.5 450 33.8
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 6.3e-37 159.5 465 35.5
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 7.0e-36 156.0 420 35.2
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 1.2e-35 155.2 470 33.4
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 5.9e-35 152.9 456 31.8
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 1.7e-34 151.4 458 32.8
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 2.2e-34 151.0 393 36.9
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 5.0e-34 149.8 453 32.7
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 6.5e-34 149.4 463 33.9
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 6.5e-34 149.4 451 34.6
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 5.5e-33 146.4 464 33.8
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 4.7e-32 143.3 457 30.6
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 3.0e-31 140.6 413 32.4
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 2.0e-30 137.9 438 31.5
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.0e-30 137.9 475 32.8
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 2.6e-30 137.5 462 32.9
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 9.7e-30 135.6 421 35.4
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 1.8e-28 131.3 444 35.1
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.1e-28 130.2 454 35.0
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 4.1e-28 130.2 461 32.5
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 5.3e-28 129.8 340 38.2
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.0e-26 125.6 455 32.1
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.2e-26 124.4 421 34.4
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 1.5e-25 121.7 453 30.2
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 1.9e-25 121.3 440 30.5
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 1.9e-25 121.3 459 30.5
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 3.2e-25 120.6 440 30.9
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 4.2e-25 120.2 431 30.9
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 4.2e-25 120.2 444 32.2
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 4.7e-24 116.7 421 34.2
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 4.7e-24 116.7 451 31.3
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 1.4e-23 115.2 435 30.3
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.3e-23 114.4 421 34.0
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 3.0e-23 114.0 427 30.7
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 3.0e-23 114.0 445 30.6
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 1.2e-22 112.1 467 29.6
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 1.2e-22 112.1 451 30.8
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 1.2e-22 112.1 433 28.6
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.5e-22 111.7 312 32.7
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.0e-22 111.3 454 31.3
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 2.6e-22 110.9 417 30.0
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 5.7e-22 109.8 439 29.8
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 5.7e-22 109.8 431 29.0
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 7.5e-22 109.4 440 29.1
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 1.3e-21 108.6 433 30.7
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.3e-21 108.6 453 30.9
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 6.3e-21 106.3 469 29.9
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 8.3e-21 105.9 440 29.3
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 1.8e-20 104.8 444 31.1
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.8e-20 104.8 430 29.1
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 7.0e-20 102.8 453 30.5
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 7.0e-20 102.8 431 27.6
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 7.0e-20 102.8 460 31.1
MSTRG.12680 Avicennia marina HOM05D003726 ORTHO05D003520 1.6e-19 101.7 417 29.0
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 5.9e-19 99.8 438 29.0
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 5.9e-19 99.8 350 32.9
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 7.7e-19 99.4 453 30.2
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 6.6e-18 96.3 448 29.0
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 8.6e-18 95.9 440 27.3
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 8.6e-18 95.9 498 30.1
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 1.1e-17 95.5 354 33.1
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 5.5e-17 93.2 225 33.8
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 1.2e-16 92.0 446 29.6
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.6e-16 91.7 446 26.9
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 1.6e-16 91.7 437 25.6
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 1.6e-16 91.7 318 33.6
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.8e-16 90.9 440 27.5
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 3.6e-16 90.5 448 29.2
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 8.0e-16 89.4 429 28.2
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 8.0e-16 89.4 471 29.3
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 8.9e-15 85.9 423 28.1
SalBow2G1798 Salvia bowleyana HOM05D003726 ORTHO05D003520 1.5e-14 85.1 410 27.1
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 2.0e-14 84.7 285 30.9
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 2.0e-14 84.7 444 28.4
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.4e-14 84.0 440 27.0
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 4.4e-14 83.6 418 26.3
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 5.7e-14 83.2 477 28.5
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 7.5e-14 82.8 429 25.9
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 9.8e-14 82.4 444 29.1
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.8e-13 80.9 444 27.9
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 4.9e-13 80.1 404 28.2
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 4.9e-13 80.1 426 26.8
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 6.3e-13 79.7 435 26.9
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 8.3e-13 79.3 419 30.3
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 8.3e-13 79.3 417 25.9
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.1e-12 79.0 435 26.9
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 2.4e-12 77.8 422 27.5
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 4.1e-12 77.0 358 29.6
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 7.0e-12 76.3 454 26.9
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 7.0e-12 76.3 454 26.9
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 7.0e-12 76.3 422 27.3
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 1.6e-11 75.1 435 26.0
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.0e-11 74.7 423 26.5
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 3.5e-11 73.9 293 29.0
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 7.8e-11 72.8 423 26.0
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.0e-10 72.4 361 26.0
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 1.7e-10 71.6 437 25.6
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 1.7e-10 71.6 444 26.8
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.8e-10 70.5 306 30.7
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 3.8e-10 70.5 435 27.4
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 5.0e-10 70.1 426 26.3
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 5.0e-10 70.1 318 29.6
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 6.6e-10 69.7 461 28.4
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 1.9e-09 68.2 150 36.7
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 2.5e-09 67.8 461 28.2
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.5e-09 67.8 151 35.8
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.3e-09 67.4 269 27.1
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 7.3e-09 66.2 453 26.9
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 9.5e-09 65.9 179 31.3
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.2e-08 65.5 420 25.7
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.2e-08 65.5 429 27.7
CDE08G1412 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 3.6e-08 63.9 443 27.3
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 1.0e-07 62.4 439 25.3
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 1.4e-07 62.0 204 31.4
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 4.0e-07 60.5 441 26.5
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 5.2e-07 60.1 441 26.5
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 5.2e-07 60.1 427 24.6
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 8.9e-07 59.3 119 37.8
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 8.9e-07 59.3 433 25.6
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 1.5e-06 58.5 404 26.0
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 2.0e-06 58.2 318 27.7
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 2.0e-06 58.2 439 25.5
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.6e-06 57.8 427 23.4
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 3.4e-06 57.4 327 26.9
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 4.4e-06 57.0 189 34.4
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 5.8e-06 56.6 437 24.3
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 7.5e-06 56.2 424 28.3
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 7.5e-06 56.2 190 32.6
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 7.5e-06 56.2 450 24.2
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 7.5e-06 56.2 269 28.3
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 7.5e-06 56.2 269 28.3
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 9.8e-06 55.8 383 25.1


User provided reference genes

Program Settings