Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 1.4e-132 476.5 265 100.0
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 9.2e-81 304.3 228 69.7
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 6.6e-79 298.1 275 60.0
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 4.3e-78 295.4 223 68.6
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 1.4e-76 290.4 223 67.3
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 2.3e-76 289.7 226 65.5
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 2.0e-75 286.6 260 61.2
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 4.4e-75 285.4 272 59.6
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 9.8e-75 284.3 269 58.4
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 1.7e-74 283.5 222 66.7
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 3.7e-74 282.3 222 66.2
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 1.4e-73 280.4 222 66.2
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.9e-73 280.0 222 66.2
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 2.4e-73 279.6 215 66.5
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 7.0e-73 278.1 221 64.7
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 1.2e-72 277.3 223 65.5
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 2.7e-72 276.2 277 56.7
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 3.5e-72 275.8 223 63.7
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 6.0e-72 275.0 266 57.5
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 1.0e-71 274.2 219 64.4
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 1.0e-71 274.2 227 63.9
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 3.3e-70 269.2 209 67.9
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 2.1e-69 266.5 225 61.8
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 2.8e-69 266.2 207 66.7
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 2.8e-69 266.2 217 63.6
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 4.7e-69 265.4 223 62.8
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.1e-68 264.2 220 64.1
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 1.4e-68 263.8 224 63.4
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 2.3e-68 263.1 225 64.0
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 6.8e-68 261.5 220 64.1
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 8.9e-68 261.2 213 65.3
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 5.8e-67 258.5 227 62.1
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 2.9e-66 256.1 229 61.6
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 4.9e-66 255.4 250 58.4
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 8.3e-66 254.6 228 62.7
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 4.1e-65 252.3 224 61.6
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 5.4e-65 251.9 231 61.0
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 1.2e-64 250.8 218 60.6
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 1.6e-64 250.4 215 58.6
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 7.8e-64 248.1 215 61.4
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 1.3e-63 247.3 205 63.4
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 2.3e-63 246.5 213 61.5
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 8.6e-63 244.6 216 60.2
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 1.5e-62 243.8 208 62.5
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 5.6e-62 241.9 234 56.0
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 1.6e-61 240.4 209 62.2
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 2.8e-61 239.6 206 60.2
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 2.8e-61 239.6 214 58.4
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 6.2e-61 238.4 208 62.5
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.1e-60 237.7 207 60.4
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 1.1e-60 237.7 206 59.7
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.8e-60 236.9 207 60.4
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 3.1e-60 236.1 209 60.3
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 6.8e-60 235.0 206 62.1
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 8.9e-60 234.6 209 59.8
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 2.0e-59 233.4 215 58.6
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 2.0e-59 233.4 207 61.8
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.6e-59 233.0 193 63.7
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 5.8e-59 231.9 213 57.7
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 9.9e-59 231.1 224 57.1
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 9.9e-59 231.1 209 58.9
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 1.3e-58 230.7 214 58.9
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 2.9e-58 229.6 204 60.8
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 6.4e-58 228.4 205 58.5
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.9e-57 226.9 209 58.4
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 1.9e-57 226.9 202 58.4
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 3.2e-57 226.1 201 59.2
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 4.2e-57 225.7 219 56.6
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 4.2e-57 225.7 201 59.2
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 5.4e-57 225.3 198 60.6
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 1.2e-56 224.2 217 59.4
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 1.6e-56 223.8 223 55.2
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 2.3e-55 219.9 213 55.4
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 3.0e-55 219.5 199 60.3
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 3.9e-55 219.2 212 57.5
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 3.9e-55 219.2 217 57.1
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 8.7e-55 218.0 216 54.6
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 8.7e-55 218.0 216 54.6
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 1.9e-54 216.9 215 54.9
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 3.3e-54 216.1 216 55.6
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 5.6e-54 215.3 188 62.8
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 7.3e-54 214.9 195 60.5
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 5.3e-52 208.8 167 65.3
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 2.0e-51 206.8 195 59.0
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 3.4e-51 206.1 220 52.3
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 4.6e-48 195.7 197 55.8
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 7.8e-48 194.9 194 57.7
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 8.7e-47 191.4 202 53.5
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 1.1e-46 191.0 208 54.3
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 1.1e-46 191.0 208 54.3
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 4.3e-46 189.1 203 51.2
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 4.3e-46 189.1 206 52.9
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 7.3e-46 188.3 212 51.9
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.3e-45 187.6 208 53.8
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.6e-45 187.2 208 53.8
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 2.4e-44 183.3 181 55.2
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 2.4e-44 183.3 360 37.5
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 1.5e-43 180.6 203 52.2
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 2.0e-43 180.3 221 49.3
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 2.0e-43 180.3 202 52.5
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 4.5e-43 179.1 203 51.7
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 5.8e-43 178.7 261 42.9
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 7.6e-43 178.3 190 54.2
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 7.6e-43 178.3 190 54.2
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 7.6e-43 178.3 210 50.5
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 1.3e-42 177.6 190 54.7
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 3.8e-42 176.0 190 53.7
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 8.4e-42 174.9 190 54.2
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 2.4e-41 173.3 117 74.4
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 1.2e-40 171.0 153 59.5
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 1.6e-40 170.6 174 54.0
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 9.0e-36 154.8 103 77.7
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 4.2e-33 146.0 175 48.6
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 1.3e-31 141.0 94 72.3
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 1.8e-28 130.6 154 48.1
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 4.6e-24 115.9 123 52.0
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 3.9e-23 112.8 80 70.0
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 6.7e-23 112.1 72 75.0
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 4.3e-22 109.4 133 45.1
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 5.7e-22 109.0 209 37.3
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.2e-19 101.3 138 42.8
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 1.3e-18 97.8 203 35.0
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 2.9e-18 96.7 212 35.4
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.9e-18 96.7 72 65.3
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 6.1e-16 89.0 110 47.3
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 5.1e-15 85.9 65 66.2
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 5.1e-15 85.9 103 44.7
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.1e-14 84.7 62 64.5
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 2.2e-13 80.5 48 85.4
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 9.4e-09 65.1 66 50.0
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 3.3e-06 56.6 94 34.0
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 5.7e-06 55.8 94 38.3


User provided reference genes

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