Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 5.8e-186 654.1 324 100.0
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.3e-129 466.8 316 70.9
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.3e-126 456.1 315 71.7
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.9e-126 455.3 315 70.5
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 6.7e-126 454.5 308 71.1
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 2.0e-125 453.0 328 69.2
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 7.4e-125 451.1 335 66.3
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 1.7e-124 449.9 323 67.8
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 2.2e-124 449.5 315 70.8
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 2.8e-124 449.1 315 70.8
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 3.7e-124 448.7 316 68.7
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 3.7e-124 448.7 323 66.6
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.8e-123 446.4 325 68.3
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 1.8e-123 446.4 315 70.2
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.5e-122 443.4 325 67.7
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 6.5e-121 438.0 316 68.0
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.9e-120 436.4 323 65.9
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.5e-120 436.0 312 69.2
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 5.5e-120 434.9 325 66.5
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 5.5e-120 434.9 323 65.6
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 5.5e-120 434.9 323 64.7
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 4.7e-119 431.8 317 65.6
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 6.1e-119 431.4 316 67.4
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.0e-118 430.6 315 66.7
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.5e-117 426.8 328 65.5
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 3.3e-117 425.6 324 65.7
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 6.3e-116 421.4 323 63.5
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 7.0e-115 417.9 319 62.7
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 7.0e-115 417.9 322 62.7
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.6e-114 416.8 323 62.5
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 2.0e-114 416.4 318 62.9
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 5.9e-114 414.8 319 63.3
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.7e-113 413.3 322 62.1
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 2.9e-113 412.5 313 66.1
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.9e-113 412.5 321 62.9
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 2.9e-113 412.5 324 63.9
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.9e-113 412.5 323 62.8
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 5.0e-113 411.8 343 61.2
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 8.5e-113 411.0 317 63.4
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.5e-112 410.2 322 62.1
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.5e-112 410.2 322 62.1
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 1.9e-112 409.8 327 62.4
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.2e-112 408.7 323 62.5
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 4.2e-112 408.7 384 56.2
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.2e-112 407.9 322 61.8
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 3.6e-111 405.6 316 62.3
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 4.7e-111 405.2 319 61.8
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.0e-110 404.1 323 61.9
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.4e-110 403.7 316 62.7
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.4e-110 403.7 319 61.8
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 4.0e-110 402.1 319 63.3
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 1.2e-109 400.6 316 61.7
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.2e-109 400.6 316 62.7
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 2.0e-109 399.8 317 61.8
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.5e-109 397.9 348 57.5
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 8.3e-108 394.4 316 62.3
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.4e-107 393.7 323 59.8
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.8e-107 393.3 326 59.2
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.2e-106 390.6 318 60.4
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.7e-106 389.4 323 60.4
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 3.5e-106 389.0 323 60.1
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 3.5e-106 389.0 325 61.8
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 4.5e-106 388.7 329 59.9
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.0e-105 387.5 318 60.1
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 2.9e-105 386.0 333 58.9
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 3.8e-105 385.6 322 58.7
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 6.5e-105 384.8 315 61.9
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.5e-104 383.6 270 70.7
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.5e-104 382.9 323 59.4
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 4.2e-104 382.1 287 66.2
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.2e-103 380.6 313 58.1
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 2.7e-103 379.4 287 65.5
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 2.3e-102 376.3 324 60.2
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 3.0e-102 375.9 320 57.2
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 4.0e-102 375.6 326 58.6
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 2.6e-101 372.9 333 56.8
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.3e-100 370.5 324 55.9
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 3.7e-100 369.0 330 56.7
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 6.3e-100 368.2 332 55.7
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 3.1e-99 365.9 318 56.9
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 5.4e-99 365.2 328 55.8
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.0e-98 363.2 273 64.5
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 2.0e-98 363.2 328 55.8
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 2.7e-98 362.8 328 56.4
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 4.5e-98 362.1 304 59.5
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 4.5e-98 362.1 328 55.2
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 5.9e-98 361.7 315 57.5
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 5.9e-98 361.7 329 56.2
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 5.9e-98 361.7 328 54.9
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.3e-97 359.8 273 64.5
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 2.3e-97 359.8 326 54.3
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 8.6e-97 357.8 320 57.2
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 8.6e-97 357.8 317 57.1
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 3.3e-96 355.9 315 57.5
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.2e-96 355.5 318 56.3
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 4.2e-96 355.5 318 56.0
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 5.5e-96 355.1 315 56.8
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 5.5e-96 355.1 319 56.7
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.6e-95 353.6 321 56.4
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 8.0e-95 351.3 318 56.0
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 4.0e-94 349.0 321 56.1
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 1.2e-93 347.4 279 63.1
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 9.8e-93 344.4 271 64.2
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 8.3e-92 341.3 289 59.9
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.6e-90 337.0 324 54.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 2.7e-90 336.3 318 53.8
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 2.7e-90 336.3 321 55.1
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 4.5e-90 335.5 317 54.9
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 1.0e-89 334.3 330 53.9
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 6.6e-89 331.6 275 60.7
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 4.9e-84 315.5 291 56.4
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 8.6e-81 304.7 326 51.5
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 1.8e-78 297.0 279 56.6
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 3.7e-76 289.3 289 54.7
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 8.6e-65 251.5 291 47.4
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 9.6e-64 248.1 276 45.3
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 3.6e-63 246.1 266 48.1
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 5.2e-62 242.3 297 45.8
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.7e-60 237.3 277 44.8
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 2.2e-60 236.9 190 58.9
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.2e-60 236.9 276 45.7
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 2.1e-58 230.3 295 43.1
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.0e-53 213.8 187 58.3
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.1e-50 203.8 164 61.0
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 5.1e-41 172.6 173 52.0
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 3.3e-32 143.3 101 65.3
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 6.5e-28 129.0 141 51.1
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 9.3e-27 125.2 131 51.9
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.8e-22 110.9 104 54.8
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 4.5e-21 106.3 120 50.8
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 4.5e-21 106.3 120 50.8
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.0e-20 102.8 179 38.5
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 2.7e-18 97.1 77 62.3
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 2.4e-14 84.0 81 53.1
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.0e-12 78.6 81 53.1
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 6.1e-10 69.3 71 50.7
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 5.1e-09 66.2 110 37.3
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 3.7e-07 60.1 49 57.1
Actinidia13541 Actinidia chinensis HOM05D000559 ORTHO05D000596 7.0e-06 55.8 130 29.2
AagrBONN_evm.TU.Sc2ySwM_368.1396 Anthoceros agrestis HOM05D000559 ORTHO05D000596 7.0e-06 55.8 124 32.3


User provided reference genes

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