Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 1.3e-79 299.7 154 100.0
Oeu045519.1 Olea europaea HOM05D004233 ORTHO05D003507 8.1e-21 104.4 130 50.0
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 1.4e-20 103.6 100 59.0
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 2.4e-20 102.8 123 48.8
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 1.2e-19 100.5 109 59.6
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 3.4e-19 99.0 117 48.7
CAN.G780.3 Capsicum annuum HOM05D004233 ORTHO05D003507 1.7e-18 96.7 122 47.5
PGSC0003DMG400004152 Solanum tuberosum HOM05D004233 ORTHO05D003507 2.2e-18 96.3 126 47.6
Solyc06g006090.1 Solanum lycopersicum HOM05D004233 ORTHO05D003507 1.1e-17 94.0 138 45.7
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 3.2e-17 92.4 129 47.3
Sopen06g002040 Solanum pennellii HOM05D004233 ORTHO05D003507 5.4e-17 91.7 138 44.9
Migut.N00891 Erythranthe guttata HOM05D004233 ORTHO05D003507 2.1e-16 89.7 86 62.8
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 6.0e-16 88.2 104 45.2
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 1.0e-15 87.4 100 50.0
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 1.3e-15 87.0 138 42.0
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 2.3e-15 86.3 122 46.7
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 2.3e-15 86.3 81 56.8
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 2.3e-15 86.3 81 59.3
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 3.0e-15 85.9 95 54.7
DCAR_007388 Daucus carota HOM05D004233 ORTHO05D003507 3.9e-15 85.5 105 46.7
MBI06_g42853_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 3.9e-15 85.5 106 43.4
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 3.9e-15 85.5 81 59.3
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 5.1e-15 85.1 111 51.4
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 8.7e-15 84.3 94 54.3
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.7e-15 84.3 126 43.7
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 8.7e-15 84.3 121 44.6
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 1.5e-14 83.6 119 45.4
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 1.5e-14 83.6 119 45.4
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.5e-14 83.6 126 43.7
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 2.5e-14 82.8 94 52.1
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 2.5e-14 82.8 109 44.0
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 4.3e-14 82.0 94 52.1
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 7.3e-14 81.3 114 45.6
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 7.3e-14 81.3 126 42.9
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 1.3e-13 80.5 113 44.2
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 1.3e-13 80.5 85 56.5
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 1.6e-13 80.1 120 41.7
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 2.1e-13 79.7 109 45.0
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 2.8e-13 79.3 94 51.1
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 3.6e-13 79.0 95 48.4
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.6e-13 79.0 86 57.0
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.6e-13 79.0 86 57.0
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.8e-13 78.6 86 57.0
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 8.1e-13 77.8 95 49.5
SalBow2G0796 Salvia bowleyana HOM05D004233 ORTHO05D003507 1.1e-12 77.4 89 48.3
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.4e-12 77.0 92 51.1
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 1.8e-12 76.6 103 44.7
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.8e-12 76.6 114 46.5
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 2.4e-12 76.3 89 50.6
CiPaw.14G060900 Carya illinoinensis HOM05D004233 ORTHO05D003507 4.0e-12 75.5 97 50.5
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 4.0e-12 75.5 126 42.1
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 5.3e-12 75.1 107 47.7
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 6.9e-12 74.7 110 43.6
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 6.9e-12 74.7 111 45.0
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 6.9e-12 74.7 109 43.1
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 9.0e-12 74.3 110 45.5
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 9.0e-12 74.3 107 47.7
Sabra09G0030900 Salix brachista HOM05D004233 ORTHO05D003507 9.0e-12 74.3 71 57.7
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 1.5e-11 73.6 110 45.5
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 1.5e-11 73.6 109 44.0
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 2.0e-11 73.2 118 39.8
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.0e-11 73.2 80 51.2
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.0e-11 73.2 80 51.2
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.0e-11 73.2 80 51.2
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 2.6e-11 72.8 95 47.4
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 2.6e-11 72.8 95 47.4
Dinv26880 Davidia involucrata HOM05D004233 ORTHO05D003507 5.8e-11 71.6 70 58.6
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 5.8e-11 71.6 109 41.3
CANSAT54G0898 Cannabis sativa HOM05D004233 ORTHO05D003507 9.9e-11 70.9 88 47.7
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 9.9e-11 70.9 109 41.3
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 9.9e-11 70.9 109 42.2
SGA_v2.0_scaffold120G32947 Striga asiatica HOM05D004233 ORTHO05D003507 9.9e-11 70.9 115 40.9
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 1.7e-10 70.1 125 40.0
Prupe.6G060400 Prunus persica HOM05D012510 ORTHO05D015115 1.7e-10 70.1 87 49.4
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 1.7e-10 70.1 83 50.6
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 2.2e-10 69.7 108 42.6
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 2.9e-10 69.3 84 47.6
Eucgr.K02995 Eucalyptus grandis HOM05D004233 ORTHO05D003507 4.9e-10 68.6 107 41.1
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.9e-10 68.6 75 49.3
Lsat_1_v5_gn_5_172261 Lactuca sativa HOM05D004233 ORTHO05D003507 4.9e-10 68.6 96 50.0
Phvul.006G065200 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 6.4e-10 68.2 91 44.0
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 8.4e-10 67.8 81 50.6
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 1.1e-09 67.4 108 40.7
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 1.4e-09 67.0 73 50.7
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 1.9e-09 66.6 110 41.8
Glyma.18G065800 Glycine max HOM05D010371 ORTHO05D003507 1.9e-09 66.6 82 50.0
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 1.9e-09 66.6 103 38.8
Sopen06g033170 Solanum pennellii HOM05D034108 ORTHO05D003507 1.9e-09 66.6 73 56.2
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 2.4e-09 66.2 107 42.1
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.4e-09 66.2 75 50.7
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.4e-09 66.2 75 50.7
PGSC0003DMG400030486 Solanum tuberosum HOM05D034108 ORTHO05D003507 2.4e-09 66.2 107 48.6
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 2.4e-09 66.2 90 43.3
Glyma.02G225600 Glycine max HOM05D010371 ORTHO05D003507 3.2e-09 65.9 108 38.0
Phvul.008G262500 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 3.2e-09 65.9 108 36.1
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 4.2e-09 65.5 113 38.9
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 5.5e-09 65.1 94 43.6
Glyma.11G176100 Glycine max HOM05D010371 ORTHO05D003507 5.5e-09 65.1 93 45.2
Glyma.01G113100 Glycine max HOM05D004233 ORTHO05D003507 7.1e-09 64.7 90 41.1
CAN.G394.108 Capsicum annuum HOM05D034108 ORTHO05D003507 9.3e-09 64.3 67 58.2
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 9.3e-09 64.3 80 47.5
Phvul.010G005000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 1.2e-08 63.9 90 42.2
SalBow4G0303 Salvia bowleyana HOM05D004233 ORTHO05D003507 1.2e-08 63.9 83 47.0
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.6e-08 63.5 105 42.9
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 1.6e-08 63.5 146 33.6
Glyma.14G192400 Glycine max HOM05D010371 ORTHO05D003507 1.6e-08 63.5 102 36.3
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 2.1e-08 63.2 81 44.4
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 2.1e-08 63.2 94 43.6
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 2.1e-08 63.2 110 42.7
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 2.7e-08 62.8 93 45.2
arahy.Tifrunner.gnm1.ann1.BL7XQ3 Arachis hypogaea HOM05D004233 ORTHO05D003507 3.5e-08 62.4 102 36.3
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 3.5e-08 62.4 140 37.1
Lalb_Chr13g0291241 Lupinus albus HOM05D004233 ORTHO05D003507 3.5e-08 62.4 91 40.7
Manes.02G121400 Manihot esculenta HOM05D004233 ORTHO05D003507 3.5e-08 62.4 107 38.3
VMungo0647G2148 Vigna mungo HOM05D010371 ORTHO05D003507 3.5e-08 62.4 108 36.1
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 4.6e-08 62.0 146 33.6
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 4.6e-08 62.0 80 42.5
Psat2g059280 Pisum sativum HOM05D010371 ORTHO05D003507 6.0e-08 61.6 100 39.0
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 7.9e-08 61.2 150 36.7
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 7.9e-08 61.2 150 36.7
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 7.9e-08 61.2 80 42.5
Glyma.07G146500 Glycine max HOM05D004233 ORTHO05D003507 7.9e-08 61.2 112 37.5
VMungo1383G3137 Vigna mungo HOM05D004233 ORTHO05D003507 7.9e-08 61.2 87 41.4
Phvul.008G106800 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 1.0e-07 60.8 87 41.4
PGR004G1616 Punica granatum HOM05D004233 ORTHO05D003507 1.3e-07 60.5 74 45.9
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 1.3e-07 60.5 81 42.0
VMungo0540G0421 Vigna mungo HOM05D010371 ORTHO05D003507 1.3e-07 60.5 82 43.9
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 2.3e-07 59.7 115 34.8
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 2.3e-07 59.7 115 34.8
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 3.0e-07 59.3 96 39.6
Lalb_Chr10g0103281 Lupinus albus HOM05D010371 ORTHO05D003507 3.0e-07 59.3 124 31.5
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 3.0e-07 59.3 38 73.7
CsaV3_3G034080 Cucumis sativus L. HOM05D004233 ORTHO05D003507 3.9e-07 58.9 80 41.2
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 3.9e-07 58.9 106 38.7
Glyma.18G197700 Glycine max HOM05D004233 ORTHO05D003507 3.9e-07 58.9 87 41.4
Gohir.D04G129214 Gossypium hirsutum HOM05D004233 ORTHO05D003507 5.1e-07 58.5 81 45.7
Gorai.012G112300 Gossypium raimondii HOM05D004233 ORTHO05D003507 5.1e-07 58.5 81 45.7
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 6.7e-07 58.2 96 39.6
Gohir.A04G088850 Gossypium hirsutum HOM05D004233 ORTHO05D003507 6.7e-07 58.2 81 45.7
Oeu030524.1 Olea europaea HOM05D004233 ORTHO05D003507 6.7e-07 58.2 94 42.6
DCAR_015449 Daucus carota HOM05D004233 ORTHO05D003507 8.7e-07 57.8 66 47.0
LjContig00155g0017503 Lotus japonicus HOM05D010371 ORTHO05D003507 8.7e-07 57.8 107 33.6
Medtr3g462980 Medicago truncatula HOM05D010371 ORTHO05D003507 8.7e-07 57.8 80 42.5
SalBow4G1886 Salvia bowleyana HOM05D004233 ORTHO05D003507 8.7e-07 57.8 70 50.0
TPR.G24023 Trifolium pratense HOM05D010371 ORTHO05D003507 8.7e-07 57.8 103 37.9
DCAR_018722 Daucus carota HOM05D004233 ORTHO05D003507 1.5e-06 57.0 77 45.5
DCAR_028820 Daucus carota HOM05D004233 ORTHO05D003507 1.5e-06 57.0 91 39.6
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.9e-06 56.6 107 40.2
MELO3C025866.2 Cucumis melo HOM05D025966 ORTHO05D003507 2.5e-06 56.2 113 35.4
Ca_14912_v3 Cicer arietinum L. HOM05D010371 ORTHO05D003507 3.3e-06 55.8 81 40.7
CsaV3_4G026060 Cucumis sativus L. HOM05D004233 ORTHO05D003507 3.3e-06 55.8 84 40.5
Medtr5g069980 Medicago truncatula HOM05D010371 ORTHO05D003507 3.3e-06 55.8 112 35.7
RcHm_v2.0_Chr3g0463681 Rosa chinensis HOM05D004233 ORTHO05D003507 3.3e-06 55.8 70 42.9
ClCG04G007170 Citrullus lanatus HOM05D004233 ORTHO05D003507 5.6e-06 55.1 78 41.0
FAN09G0897 Fragaria x ananassa HOM05D004233 ORTHO05D003507 5.6e-06 55.1 117 38.5
Lalb_Chr04g0252311 Lupinus albus HOM05D010371 ORTHO05D003507 5.6e-06 55.1 119 31.9
Lj6g0011323 Lotus japonicus HOM05D010371 ORTHO05D003507 7.4e-06 54.7 109 32.1
Medtr2g013470 Medicago truncatula HOM05D004233 ORTHO05D003507 7.4e-06 54.7 104 40.4
Prupe.6G271900 Prunus persica HOM05D004233 ORTHO05D003507 7.4e-06 54.7 114 38.6
Ca_05588_v3 Cicer arietinum L. HOM05D010371 ORTHO05D003507 9.6e-06 54.3 98 38.8
Sed0017480 Sechium edule HOM05D004233 ORTHO05D003507 9.6e-06 54.3 68 42.6


User provided reference genes

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