Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 2.2e-105 385.6 183 100.0
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 3.7e-81 305.1 183 74.3
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.4e-80 303.1 177 75.1
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 5.9e-79 297.7 183 72.1
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 7.8e-79 297.4 179 74.9
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 7.8e-79 297.4 179 74.9
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 5.6e-77 291.2 183 70.5
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.2e-76 290.0 177 74.0
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 1.0e-75 287.0 178 73.0
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 8.9e-75 283.9 183 69.4
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 8.9e-75 283.9 183 69.4
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.2e-74 283.5 177 71.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.0e-74 282.7 178 73.0
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 3.4e-74 282.0 183 68.3
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 4.4e-74 281.6 179 68.7
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 2.2e-73 279.3 173 70.5
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 2.9e-73 278.9 183 69.9
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 3.7e-73 278.5 183 69.4
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 3.7e-73 278.5 185 69.7
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 3.7e-73 278.5 179 69.8
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 4.9e-73 278.1 185 68.1
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 8.3e-73 277.3 183 68.9
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 8.3e-73 277.3 183 69.4
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 3.2e-72 275.4 171 73.1
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 4.1e-72 275.0 183 66.1
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 7.0e-72 274.2 177 69.5
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 7.0e-72 274.2 177 68.4
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.2e-71 273.5 173 68.8
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 2.7e-71 272.3 177 68.9
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 7.8e-71 270.8 181 67.4
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.0e-70 270.4 184 64.7
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 1.0e-70 270.4 180 66.1
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.0e-70 270.4 188 67.0
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.0e-70 270.4 183 64.5
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.3e-70 270.0 175 71.4
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 3.0e-70 268.9 178 67.4
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.0e-70 268.9 177 68.4
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.0e-70 268.9 174 69.0
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 3.0e-70 268.9 178 66.9
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 3.9e-70 268.5 181 66.3
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 5.0e-70 268.1 184 65.2
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 6.6e-70 267.7 183 66.1
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 8.6e-70 267.3 180 68.3
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 8.6e-70 267.3 180 67.8
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 8.6e-70 267.3 177 68.9
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.1e-69 266.9 185 65.9
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.1e-69 266.9 184 64.1
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 1.5e-69 266.5 182 65.4
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.9e-69 266.2 175 66.9
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 1.9e-69 266.2 182 63.7
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 4.3e-69 265.0 182 62.6
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 7.3e-69 264.2 174 67.2
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 7.3e-69 264.2 176 67.6
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 9.5e-69 263.8 182 62.6
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 9.5e-69 263.8 178 66.3
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 1.6e-68 263.1 180 67.8
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 1.6e-68 263.1 185 64.3
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 2.1e-68 262.7 179 67.0
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 3.6e-68 261.9 180 66.1
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 4.7e-68 261.5 180 65.6
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 4.7e-68 261.5 173 68.2
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 6.2e-68 261.2 180 67.2
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 8.0e-68 260.8 178 67.4
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 8.0e-68 260.8 180 65.6
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 8.0e-68 260.8 183 62.8
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 1.1e-67 260.4 178 65.2
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 1.4e-67 260.0 180 65.0
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 1.8e-67 259.6 180 65.0
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 8.9e-67 257.3 174 68.4
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 8.9e-67 257.3 175 66.9
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.5e-66 256.5 182 63.7
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 2.0e-66 256.1 180 66.7
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 2.6e-66 255.8 184 65.8
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.6e-66 255.8 175 66.9
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 2.6e-66 255.8 182 63.7
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 7.5e-66 254.2 180 65.6
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 1.7e-65 253.1 178 63.5
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.2e-65 252.7 177 66.1
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 2.2e-65 252.7 177 65.5
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.4e-64 250.0 175 65.7
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 4.1e-64 248.4 165 67.3
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 4.1e-64 248.4 175 65.7
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 9.2e-64 247.3 177 61.0
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-63 246.9 175 65.7
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 1.2e-63 246.9 156 71.8
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 2.0e-63 246.1 180 57.2
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 4.6e-63 245.0 152 74.3
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 5.0e-62 241.5 179 61.5
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 5.6e-61 238.0 175 61.1
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.2e-60 236.9 172 62.8
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.1e-60 236.1 141 73.0
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 8.1e-60 234.2 154 68.2
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 1.1e-59 233.8 179 58.1
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.4e-59 233.4 176 56.2
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.3e-59 232.6 151 68.9
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 1.5e-58 229.9 173 57.8
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 1.5e-58 229.9 173 57.8
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 2.6e-58 229.2 161 64.6
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 3.4e-58 228.8 163 64.4
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 6.4e-57 224.6 173 61.3
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 7.8e-55 217.6 149 65.1
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 2.3e-54 216.1 180 56.1
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 4.3e-53 211.8 172 58.7
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 8.4e-49 197.6 155 55.5
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 1.4e-48 196.8 179 49.2
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 7.8e-47 191.0 171 50.9
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 6.6e-46 188.0 185 46.5
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.6e-44 183.3 128 64.1
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 2.6e-42 176.0 180 45.6
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 4.9e-41 171.8 139 59.0
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 5.4e-40 168.3 123 60.2
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 3.4e-34 149.1 178 43.3
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 2.4e-32 142.9 130 56.2
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 2.7e-23 112.8 173 34.7
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 5.1e-22 108.6 75 68.0
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 5.6e-21 105.1 153 37.9
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 1.0e-17 94.4 190 33.7
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 7.9e-15 84.7 91 50.5
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 3.9e-14 82.4 59 55.9
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 2.7e-07 59.7 178 28.1
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 7.9e-07 58.2 195 26.7
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 1.4e-06 57.4 179 27.4
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 3.0e-06 56.2 178 25.8
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 6.7e-06 55.1 190 26.3
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 6.7e-06 55.1 190 26.3
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 8.8e-06 54.7 180 25.0


User provided reference genes

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