Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 8.4e-90 333.6 158 100.0
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.5e-75 286.2 163 81.0
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.9e-74 282.0 163 79.8
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.1e-73 280.0 163 79.1
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 2.5e-73 278.9 163 79.8
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 5.5e-73 277.7 163 78.5
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 1.2e-72 276.6 163 78.5
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 1.2e-72 276.6 163 78.5
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.2e-72 276.6 163 77.9
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.2e-72 276.6 163 77.9
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.6e-72 276.2 163 77.9
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 2.7e-72 275.4 145 86.2
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 6.7e-71 270.8 160 77.5
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 6.7e-71 270.8 160 77.5
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 6.7e-71 270.8 163 76.1
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 6.7e-71 270.8 163 74.2
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 6.7e-71 270.8 162 75.9
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 6.7e-71 270.8 163 79.1
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 6.7e-71 270.8 158 79.1
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 8.8e-71 270.4 160 77.5
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 8.8e-71 270.4 163 78.5
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-70 270.0 160 77.5
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 1.1e-70 270.0 158 79.7
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.5e-70 269.6 145 82.8
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 1.5e-70 269.6 163 76.1
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 2.5e-70 268.9 145 84.1
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 2.5e-70 268.9 145 84.1
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 3.3e-70 268.5 158 78.5
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 4.3e-70 268.1 145 83.4
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 5.7e-70 267.7 163 74.2
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 7.4e-70 267.3 144 83.3
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 7.4e-70 267.3 145 84.1
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 7.4e-70 267.3 145 84.1
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 9.7e-70 266.9 158 77.8
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.3e-69 266.5 160 77.5
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 76.1
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 74.8
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 2.2e-69 265.8 163 74.8
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 2.8e-69 265.4 162 77.2
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 3.7e-69 265.0 144 84.0
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 4.8e-69 264.6 163 76.7
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 8.2e-69 263.8 144 83.3
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 8.2e-69 263.8 162 75.9
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.1e-68 263.5 163 75.5
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 1.4e-68 263.1 163 74.2
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.4e-68 262.3 163 75.5
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 4.1e-68 261.5 159 74.8
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 5.3e-68 261.2 163 75.5
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 6.9e-68 260.8 145 79.3
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 7.7e-67 257.3 163 74.8
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 7.7e-67 257.3 158 77.8
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.0e-66 256.9 163 73.0
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 1.3e-66 256.5 143 80.4
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.3e-66 256.5 143 81.1
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.7e-66 256.1 163 72.4
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.2e-66 255.8 143 82.5
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 8.5e-66 253.8 158 75.3
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.1e-65 253.4 163 72.4
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.9e-65 252.7 163 72.4
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 2.5e-65 252.3 163 70.6
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.2e-65 251.5 163 71.2
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 5.5e-65 251.1 160 71.9
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.5e-65 251.1 143 79.7
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 7.2e-65 250.8 159 74.8
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 9.4e-65 250.4 159 72.3
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.6e-64 248.4 139 80.6
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 3.6e-64 248.4 142 78.9
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 6.1e-64 247.7 163 70.6
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 6.1e-64 247.7 143 76.9
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 7.9e-64 247.3 163 68.7
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 1.0e-63 246.9 163 68.1
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.4e-63 246.5 160 70.0
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 1.8e-63 246.1 163 67.5
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.3e-63 245.7 163 73.0
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 2.3e-63 245.7 145 77.9
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.0e-63 245.4 140 79.3
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 3.9e-63 245.0 163 67.5
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 3.9e-63 245.0 163 67.5
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 3.9e-63 245.0 163 67.5
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 6.7e-63 244.2 159 67.3
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 6.7e-63 244.2 163 67.5
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 8.8e-63 243.8 160 70.0
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.1e-62 243.4 163 67.5
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.1e-62 243.4 160 68.1
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 3.3e-62 241.9 163 65.6
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 4.4e-62 241.5 163 70.6
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 5.7e-62 241.1 163 66.3
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 5.7e-62 241.1 163 66.3
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 5.7e-62 241.1 163 65.6
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 5.7e-62 241.1 160 68.8
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.7e-62 240.4 137 78.8
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.2e-61 239.2 160 67.5
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.7e-61 238.4 145 74.5
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 4.8e-61 238.0 143 74.1
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 4.8e-61 238.0 143 74.1
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 6.3e-61 237.7 157 70.1
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 1.8e-60 236.1 178 64.6
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 4.1e-60 235.0 143 71.3
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 4.1e-60 235.0 143 71.3
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 4.1e-60 235.0 160 68.1
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.2e-59 233.4 163 68.1
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.2e-59 233.4 160 68.1
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 4.5e-59 231.5 139 75.5
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 7.7e-59 230.7 143 69.2
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 2.2e-58 229.2 143 69.9
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 3.8e-58 228.4 143 72.7
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.1e-57 226.9 140 73.6
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 9.4e-57 223.8 157 67.5
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 9.4e-57 223.8 136 73.5
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.2e-56 223.4 163 65.0
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.6e-56 221.9 124 81.5
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.0e-55 220.3 164 62.8
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.4e-55 219.9 143 68.5
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 9.7e-54 213.8 160 67.5
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 7.2e-49 197.6 109 80.7
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 4.8e-45 184.9 163 56.4
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 4.5e-43 178.3 163 50.3
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 2.2e-42 176.0 163 50.9
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.1e-41 173.7 123 64.2
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.1e-40 169.5 129 60.5
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 1.4e-39 166.8 163 54.0
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 4.0e-39 165.2 103 73.8
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 5.7e-38 161.4 123 57.7
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.2e-37 159.5 145 53.8
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 2.0e-35 152.9 126 57.9
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.7e-35 152.5 164 48.8
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 3.5e-35 152.1 164 49.4
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.9e-34 149.1 176 50.6
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 3.8e-34 148.7 87 78.2
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 5.0e-34 148.3 176 50.6
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.9e-33 146.4 163 47.2
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 9.8e-30 134.0 90 71.1
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.7e-29 133.3 165 42.4
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.2e-29 132.9 130 53.8
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.2e-29 132.9 164 44.5
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 7.3e-25 117.9 67 82.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.4e-20 102.8 139 38.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 2.0e-14 83.2 61 62.3
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 2.4e-12 76.3 62 64.5
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 5.4e-12 75.1 53 60.4
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 2.7e-11 72.8 119 33.6
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.0e-10 70.9 58 58.6
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 2.5e-09 66.2 48 56.2
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 2.1e-08 63.2 95 40.0
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 3.4e-06 55.8 46 50.0


User provided reference genes

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