Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 5.6e-80 300.8 146 100.0
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 2.2e-52 209.1 159 66.0
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.9e-51 206.1 149 67.8
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.9e-51 206.1 159 64.8
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.9e-51 206.1 159 64.8
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.6e-50 203.0 158 63.3
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 8.7e-49 197.2 151 65.6
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.1e-48 196.8 150 65.3
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.5e-48 195.7 156 66.7
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.3e-48 195.3 150 64.0
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.3e-48 195.3 155 62.6
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 9.6e-48 193.7 158 62.0
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.3e-47 193.4 155 61.9
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.8e-47 192.2 144 66.0
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 8.2e-47 190.7 139 66.2
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-46 189.5 154 61.0
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-46 189.5 154 61.0
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-46 189.5 154 61.0
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 6.9e-46 187.6 139 65.5
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.0e-45 186.0 133 69.9
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 2.6e-45 185.7 136 66.2
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 2.6e-45 185.7 150 62.0
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 3.4e-45 185.3 151 60.9
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.4e-45 185.3 157 58.6
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 4.5e-45 184.9 140 63.6
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 5.8e-45 184.5 136 65.4
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 7.6e-45 184.1 160 60.0
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.0e-44 183.7 153 61.4
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.7e-44 183.0 147 62.6
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 1.7e-44 183.0 126 68.3
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 3.8e-44 181.8 149 61.7
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 4.9e-44 181.4 149 61.1
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 6.5e-44 181.0 153 60.1
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 6.5e-44 181.0 149 62.4
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 6.5e-44 181.0 142 64.1
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 8.4e-44 180.6 149 59.7
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.1e-43 180.3 149 61.1
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.1e-43 180.3 155 60.0
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-43 180.3 148 62.2
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-43 180.3 155 60.0
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 1.4e-43 179.9 157 60.5
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.9e-43 179.5 147 61.9
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.9e-43 179.5 150 60.7
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 2.5e-43 179.1 152 59.9
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 2.5e-43 179.1 144 59.7
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 3.2e-43 178.7 138 64.5
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 4.2e-43 178.3 150 60.7
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 4.2e-43 178.3 138 60.9
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 5.5e-43 177.9 142 62.7
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 5.5e-43 177.9 158 62.0
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 5.5e-43 177.9 140 60.7
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 9.3e-43 177.2 149 59.7
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 1.2e-42 176.8 154 59.7
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 2.1e-42 176.0 147 59.2
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 4.6e-42 174.9 143 60.8
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 4.6e-42 174.9 156 59.6
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 4.6e-42 174.9 145 62.1
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 6.0e-42 174.5 148 59.5
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 7.9e-42 174.1 148 59.5
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.0e-41 173.7 144 60.4
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.3e-41 173.3 140 61.4
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 1.8e-41 172.9 133 64.7
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 1.8e-41 172.9 156 59.0
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 2.3e-41 172.6 144 58.3
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.3e-41 172.6 142 62.7
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 2.3e-41 172.6 138 65.2
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.0e-41 172.2 139 61.9
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 3.9e-41 171.8 139 60.4
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 6.7e-41 171.0 136 63.2
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 8.7e-41 170.6 145 58.6
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 8.7e-41 170.6 159 58.5
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 2.5e-40 169.1 97 78.4
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 2.5e-40 169.1 138 62.3
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 2.5e-40 169.1 126 66.7
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 7.4e-40 167.5 93 80.6
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 9.7e-40 167.2 139 59.0
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.3e-39 166.8 131 61.8
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.3e-39 166.8 139 57.6
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 1.6e-39 166.4 142 62.0
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.2e-39 166.0 138 61.6
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 3.7e-39 165.2 143 59.4
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 3.7e-39 165.2 137 59.1
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 6.3e-39 164.5 141 60.3
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 6.3e-39 164.5 138 59.4
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 8.2e-39 164.1 139 59.7
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 8.2e-39 164.1 139 59.7
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 8.2e-39 164.1 139 59.7
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 1.8e-38 162.9 139 57.6
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.8e-38 162.9 140 59.3
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 2.4e-38 162.5 158 56.3
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 2.4e-38 162.5 145 60.7
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 4.1e-38 161.8 128 59.4
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 9.0e-38 160.6 139 56.8
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 2.0e-37 159.5 83 84.3
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.0e-37 159.5 140 55.7
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.0e-37 159.5 162 53.7
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 5.9e-37 157.9 95 75.8
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 5.9e-37 157.9 139 57.6
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.3e-36 156.8 138 60.1
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 1.7e-36 156.4 145 53.1
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.9e-36 155.6 142 56.3
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 2.9e-36 155.6 140 57.1
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.0e-36 154.8 140 56.4
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.4e-35 153.3 143 56.6
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.4e-35 153.3 166 51.2
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.2e-35 152.1 92 75.0
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.2e-35 151.8 151 51.0
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 5.5e-35 151.4 127 54.3
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 7.9e-34 147.5 148 53.4
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.4e-33 146.7 79 82.3
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 2.3e-33 146.0 143 50.3
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 7.4e-32 141.0 143 48.3
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.3e-31 140.2 171 50.3
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 2.8e-31 139.0 136 55.1
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 6.3e-31 137.9 139 54.0
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 2.4e-30 136.0 136 55.1
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 2.4e-30 136.0 135 53.3
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 9.1e-30 134.0 87 70.1
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.0e-28 130.6 162 45.1
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 7.2e-27 124.4 112 58.0
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 2.1e-26 122.9 147 49.0
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 6.1e-26 121.3 108 56.5
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.9e-25 118.6 97 57.7
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 6.7e-25 117.9 75 72.0
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 2.0e-24 116.3 137 46.7
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 8.2e-23 110.9 99 57.6
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 1.1e-22 110.5 83 60.2
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.8e-22 109.8 86 57.0
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 1.4e-19 100.1 89 56.2
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 2.5e-19 99.4 103 46.6
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 2.5e-19 99.4 82 53.7
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 6.1e-18 94.7 93 47.3
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 8.0e-18 94.4 140 43.6
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 2.3e-17 92.8 97 54.6
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.4e-14 83.6 66 60.6
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.6e-13 80.1 87 47.1
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 1.6e-13 80.1 82 51.2
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.1e-11 73.9 75 44.0
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 1.8e-09 66.6 41 68.3
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 3.0e-09 65.9 44 65.9
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 5.2e-09 65.1 43 67.4
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 8.8e-09 64.3 49 59.2


User provided reference genes

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