Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.5e-229 800.0 768 100.0
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.9e-86 324.7 222 79.3
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 6.1e-85 319.7 230 77.4
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 6.8e-84 316.2 231 76.2
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 1.5e-83 315.1 231 76.2
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 1.5e-83 315.1 230 76.5
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 2.0e-83 314.7 217 77.9
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 3.4e-83 313.9 222 77.0
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.7e-82 310.5 225 76.0
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 1.8e-81 308.1 218 77.5
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.4e-81 307.8 233 75.5
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 3.1e-81 307.4 212 77.8
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 3.1e-81 307.4 212 77.8
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 9.1e-81 305.8 230 77.0
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 9.1e-81 305.8 225 75.1
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 1.6e-80 305.1 229 76.0
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 4.5e-80 303.5 231 72.7
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 3.8e-79 300.4 213 77.9
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 5.0e-79 300.1 225 74.2
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 8.6e-79 299.3 230 74.8
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 8.6e-79 299.3 225 73.8
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 9.5e-78 295.8 230 72.6
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.6e-77 295.0 213 77.5
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 6.1e-77 293.1 211 78.2
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.0e-76 292.4 226 73.5
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.4e-76 292.0 214 73.8
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 1.8e-76 291.6 220 72.7
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 2.3e-76 291.2 227 72.7
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 6.8e-76 289.7 222 72.5
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 6.8e-76 289.7 225 72.0
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 8.9e-76 289.3 225 72.0
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 8.9e-76 289.3 227 71.8
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.5e-75 288.5 228 72.8
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.3e-74 285.4 228 72.4
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 2.2e-74 284.6 227 70.9
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 3.7e-74 283.9 221 70.1
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 8.3e-74 282.7 234 70.5
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 1.1e-73 282.3 213 72.3
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 2.4e-73 281.2 232 69.4
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 3.2e-73 280.8 225 70.2
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 5.4e-73 280.0 228 70.6
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 9.2e-73 279.3 207 74.4
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 1.6e-72 278.5 237 67.5
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 5.9e-72 276.6 222 70.3
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 7.8e-72 276.2 252 65.1
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 1.7e-71 275.0 228 69.7
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.7e-71 275.0 227 68.7
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.7e-71 275.0 231 69.3
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 5.0e-71 273.5 219 68.0
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 6.6e-71 273.1 224 68.8
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 8.6e-71 272.7 226 68.1
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.5e-70 271.9 231 68.4
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 1.9e-70 271.6 228 68.0
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.9e-70 271.6 228 67.5
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 5.6e-70 270.0 227 67.8
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 7.3e-70 269.6 219 69.9
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 9.5e-70 269.2 226 68.1
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 2.1e-69 268.1 227 67.0
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 2.8e-69 267.7 236 67.4
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.8e-69 267.7 212 70.8
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 6.2e-69 266.5 229 66.8
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 6.2e-69 266.5 231 67.1
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 6.2e-69 266.5 215 68.8
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 8.0e-69 266.2 229 69.0
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.4e-68 265.4 253 64.0
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.4e-68 265.4 226 67.7
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 2.3e-68 264.6 229 68.6
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 6.8e-68 263.1 213 69.5
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 8.9e-68 262.7 220 69.1
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 1.5e-67 261.9 227 67.8
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 4.4e-67 260.4 228 66.2
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 2.9e-66 257.7 231 64.9
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 4.9e-66 256.9 230 67.4
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 8.3e-66 256.1 230 67.4
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 1.1e-65 255.8 228 67.1
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 1.1e-65 255.8 208 68.3
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.4e-65 255.4 230 67.0
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.4e-65 255.4 231 68.0
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 1.4e-65 255.4 227 66.1
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 1.9e-65 255.0 231 64.9
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 2.4e-65 254.6 211 68.2
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 1.6e-64 251.9 163 80.4
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 2.7e-64 251.1 241 62.7
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.0e-63 249.2 230 63.5
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.3e-63 248.1 226 65.9
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 2.3e-63 248.1 215 64.7
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 3.0e-63 247.7 228 64.9
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 1.1e-62 245.7 210 64.8
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 1.5e-62 245.4 227 63.0
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 3.3e-62 244.2 224 64.3
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 2.1e-61 241.5 213 65.3
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 6.2e-61 240.0 140 85.0
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 2.3e-60 238.0 142 83.8
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 4.0e-60 237.3 220 62.3
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 1.2e-59 235.7 232 58.6
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.5e-59 235.3 227 62.6
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.4e-59 234.2 135 88.1
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 4.4e-59 233.8 210 63.3
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.4e-57 228.0 234 56.0
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.4e-57 228.0 234 56.0
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 2.7e-56 224.6 237 59.1
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 2.7e-56 224.6 235 58.3
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 3.5e-56 224.2 262 52.7
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.0e-55 222.6 217 62.2
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 6.6e-55 219.9 226 56.6
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 4.3e-54 217.2 131 80.9
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 5.6e-54 216.9 249 54.6
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 3.6e-53 214.2 235 58.3
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 3.6e-53 214.2 203 64.0
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 2.0e-51 208.4 166 65.1
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 2.2e-50 204.9 171 64.3
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 1.1e-49 202.6 134 76.1
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 7.1e-49 199.9 181 64.6
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.2e-48 199.1 176 64.8
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 4.6e-48 197.2 162 67.9
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 3.9e-39 167.5 198 50.5
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 2.2e-34 151.8 124 63.7
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 2.9e-34 151.4 153 63.4
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 4.2e-33 147.5 134 61.9
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 2.1e-29 135.2 127 55.9
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 4.8e-29 134.0 182 45.6
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 3.7e-21 107.8 128 45.3
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 4.0e-20 104.4 222 37.8
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 4.5e-19 100.9 86 66.3
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 7.1e-17 93.6 83 66.3
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 1.1e-14 86.3 57 75.4
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.1e-09 69.7 50 72.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 1.6e-08 65.9 121 34.7


User provided reference genes

Program Settings