Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 0.0e+00 1192.9 644 100.0
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.2e-70 271.9 454 42.7
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 3.7e-67 260.4 393 47.1
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 1.4e-66 258.5 453 41.7
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 2.1e-62 244.6 390 45.1
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.8e-61 241.5 432 42.4
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 9.1e-58 229.2 418 39.7
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 9.1e-58 229.2 366 44.8
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 1.9e-55 221.5 477 37.3
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 5.5e-55 219.9 395 40.5
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 4.7e-54 216.9 401 39.7
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.0e-53 215.7 372 38.4
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.4e-53 215.3 378 42.3
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 3.0e-53 214.2 479 37.2
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 5.2e-53 213.4 390 40.3
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 3.4e-52 210.7 479 38.0
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 4.9e-51 206.8 382 38.7
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 4.1e-50 203.8 410 39.5
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 5.4e-50 203.4 420 38.1
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 3.5e-49 200.7 478 35.8
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 1.7e-48 198.4 420 36.4
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 2.9e-48 197.6 425 36.9
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 3.8e-48 197.2 425 38.8
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 6.6e-48 196.4 395 37.2
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 1.1e-47 195.7 500 35.2
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 4.0e-45 187.2 394 39.3
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 5.2e-45 186.8 399 35.8
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 2.6e-44 184.5 408 36.0
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 2.9e-43 181.0 410 37.8
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 8.3e-43 179.5 409 36.4
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 2.0e-41 174.9 431 35.7
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 2.7e-41 174.5 390 36.7
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 5.0e-40 170.2 442 32.8
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 1.5e-39 168.7 359 36.2
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.5e-39 168.7 504 32.3
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 2.5e-39 167.9 384 34.4
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 2.1e-38 164.9 451 34.8
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 2.8e-38 164.5 367 36.8
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 4.7e-38 163.7 434 32.0
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 2.3e-37 161.4 580 29.1
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 2.0e-36 158.3 470 32.3
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 4.4e-36 157.1 420 31.2
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 3.7e-35 154.1 364 34.6
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 1.1e-34 152.5 341 36.4
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 3.2e-34 151.0 398 32.4
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 2.7e-33 147.9 425 32.7
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 4.3e-31 140.6 411 32.8
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 7.3e-31 139.8 503 29.4
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 9.5e-31 139.4 372 33.6
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 3.1e-29 134.4 374 34.5
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 5.2e-29 133.7 467 29.6
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 3.4e-28 131.0 477 30.4
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 5.8e-28 130.2 303 35.0
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 5.8e-28 130.2 430 31.6
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 1.3e-27 129.0 454 31.7
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 2.9e-27 127.9 226 42.9
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 6.4e-27 126.7 327 33.6
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 1.4e-26 125.6 476 29.6
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 1.9e-26 125.2 499 30.3
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 4.1e-26 124.0 340 32.6
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 9.2e-26 122.9 444 30.4
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 1.2e-25 122.5 340 32.4
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 1.2e-25 122.5 340 32.4
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 1.2e-25 122.5 463 30.7
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 1.2e-25 122.5 433 29.1
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 1.6e-25 122.1 369 29.8
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 2.1e-25 121.7 431 30.2
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 6.0e-25 120.2 344 31.7
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 1.0e-24 119.4 340 32.9
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 2.3e-24 118.2 426 29.8
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 2.3e-24 118.2 560 25.9
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 6.6e-24 116.7 401 30.4
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 3.3e-23 114.4 384 29.4
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 3.3e-23 114.4 369 28.7
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 5.6e-23 113.6 345 31.6
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 7.3e-23 113.2 496 28.8
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 2.1e-22 111.7 368 28.8
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 2.8e-22 111.3 383 27.9
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 3.6e-22 110.9 414 29.0
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 4.7e-22 110.5 368 28.3
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 8.1e-22 109.8 394 31.5
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 8.1e-22 109.8 356 29.5
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.1e-21 109.4 366 29.8
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 1.4e-21 109.0 387 28.9
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 3.1e-21 107.8 371 27.2
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 6.8e-21 106.7 393 31.0
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 8.9e-21 106.3 376 28.7
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 1.2e-20 105.9 387 28.4
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.5e-20 105.5 262 35.1
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 2.6e-20 104.8 124 54.8
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 2.6e-20 104.8 124 54.8
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 4.4e-20 104.0 333 30.9
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 8.4e-19 99.8 141 44.0
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 1.4e-18 99.0 141 44.7
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 1.9e-18 98.6 316 31.3
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 4.1e-18 97.4 201 36.8
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 4.1e-18 97.4 198 37.4
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 4.1e-18 97.4 396 29.3
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 5.4e-18 97.1 379 29.0
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 3.5e-17 94.4 379 28.8
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 2.3e-16 91.7 178 39.9
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 3.9e-16 90.9 461 26.5
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.5e-15 89.0 388 28.1
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 1.5e-15 89.0 391 28.1
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 1.9e-15 88.6 458 26.6
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 7.3e-15 86.7 165 36.4
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 9.6e-15 86.3 165 36.4
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 9.6e-15 86.3 292 30.5
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 1.2e-14 85.9 242 34.7
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.6e-14 85.5 165 35.8
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 1.6e-14 85.5 207 32.9
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 2.1e-14 85.1 160 40.0
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 1.1e-13 82.8 275 30.9
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 1.2e-12 79.3 432 26.6
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 1.3e-11 75.9 486 26.1
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.7e-11 75.5 72 50.0
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 1.7e-11 75.5 409 25.9
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 2.2e-11 75.1 328 25.9
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 3.8e-11 74.3 207 33.8
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 1.4e-10 72.4 285 28.4
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 2.4e-10 71.6 411 26.0
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 3.0e-08 64.7 152 36.2
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 3.9e-08 64.3 62 53.2
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 8.7e-08 63.2 332 28.6
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 2.5e-07 61.6 156 30.8
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 4.3e-07 60.8 93 44.1
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 4.3e-07 60.8 93 44.1
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.3e-07 60.8 135 34.1
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.3e-07 60.1 135 34.1
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 7.3e-07 60.1 368 25.8
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.8e-06 58.2 134 32.8
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.6e-06 57.8 123 34.1
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 6.2e-06 57.0 124 33.1
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 8.1e-06 56.6 123 36.6


User provided reference genes

Program Settings