Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 1.4e-66 256.1 129 100.0
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 1.8e-58 229.2 129 83.7
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 2.0e-57 225.7 131 85.5
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 2.0e-57 225.7 131 84.7
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 2.0e-57 225.7 131 84.7
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 2.0e-57 225.7 131 84.7
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 2.0e-57 225.7 129 84.5
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 3.4e-57 224.9 132 84.8
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 4.5e-57 224.6 129 82.2
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 5.9e-57 224.2 131 84.7
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 7.7e-57 223.8 131 83.2
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.7e-56 222.6 129 85.3
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.2e-56 222.2 129 82.2
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 8.5e-56 220.3 131 84.0
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 1.4e-55 219.5 129 82.2
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 2.5e-55 218.8 131 81.7
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 3.2e-55 218.4 129 80.6
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 5.5e-55 217.6 129 81.4
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 5.5e-55 217.6 130 82.3
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 7.2e-55 217.2 129 83.7
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 7.2e-55 217.2 133 81.2
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 7.2e-55 217.2 129 81.4
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 7.2e-55 217.2 128 80.5
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 9.4e-55 216.9 130 82.3
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.2e-54 216.5 130 84.6
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.6e-54 216.1 132 83.3
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.1e-54 215.7 132 81.8
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 2.7e-54 215.3 131 80.9
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.6e-54 214.9 130 80.8
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.6e-54 214.9 130 80.8
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 3.6e-54 214.9 130 83.1
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 3.6e-54 214.9 129 80.6
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.9e-54 213.8 130 80.0
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 7.9e-54 213.8 134 79.1
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 1.0e-53 213.4 129 82.9
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 1.0e-53 213.4 130 80.0
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.4e-53 213.0 129 80.6
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 1.4e-53 213.0 129 78.3
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 1.4e-53 213.0 130 80.8
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.8e-53 212.6 130 79.2
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.0e-53 211.8 131 82.4
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 3.0e-53 211.8 129 81.4
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 3.0e-53 211.8 129 76.7
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 3.0e-53 211.8 133 78.9
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 3.9e-53 211.5 132 78.0
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 3.9e-53 211.5 130 80.8
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 3.9e-53 211.5 130 80.8
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 5.2e-53 211.1 134 76.9
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 5.2e-53 211.1 133 80.5
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 6.7e-53 210.7 129 79.8
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 6.7e-53 210.7 130 80.0
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 6.7e-53 210.7 127 82.7
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 6.7e-53 210.7 129 82.2
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 8.8e-53 210.3 130 79.2
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.1e-52 209.9 132 81.1
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.1e-52 209.9 130 79.2
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 1.1e-52 209.9 128 80.5
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.1e-52 209.9 132 81.1
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 2.0e-52 209.1 129 78.3
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.6e-52 208.8 131 78.6
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.6e-52 208.8 129 78.3
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 4.4e-52 208.0 133 78.2
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 4.4e-52 208.0 129 80.6
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 5.7e-52 207.6 134 76.1
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.4e-52 207.2 129 79.1
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 7.4e-52 207.2 129 78.3
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.3e-51 206.5 129 78.3
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.7e-51 206.1 129 80.6
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 2.2e-51 205.7 129 80.6
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.2e-51 205.7 129 80.6
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 2.8e-51 205.3 133 76.7
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 3.7e-51 204.9 133 75.9
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.7e-51 204.9 130 79.2
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 3.7e-51 204.9 129 78.3
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.7e-51 204.9 128 77.3
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 3.7e-51 204.9 129 80.6
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 4.8e-51 204.5 117 82.1
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 6.3e-51 204.1 134 76.1
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 8.2e-51 203.8 133 75.9
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 8.2e-51 203.8 133 75.2
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 8.2e-51 203.8 133 75.2
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 8.2e-51 203.8 130 76.9
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 8.2e-51 203.8 133 75.9
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 76.7
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 75.2
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.1e-50 203.4 130 76.2
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.4e-50 203.0 129 76.0
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 1.4e-50 203.0 129 79.1
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.8e-50 202.6 126 78.6
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.8e-50 202.6 129 78.3
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 1.8e-50 202.6 129 77.5
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.1e-50 201.8 129 78.3
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 5.3e-50 201.1 133 75.2
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 5.3e-50 201.1 129 76.0
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 7.0e-50 200.7 133 74.4
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 7.0e-50 200.7 130 75.4
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 7.0e-50 200.7 129 77.5
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 9.1e-50 200.3 129 75.2
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 9.1e-50 200.3 129 76.7
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.2e-49 199.9 125 80.0
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 1.6e-49 199.5 134 73.9
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.6e-49 199.5 129 72.1
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 1.6e-49 199.5 129 76.7
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 1.6e-49 199.5 129 77.5
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 2.0e-49 199.1 134 73.9
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 2.0e-49 199.1 130 76.9
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.0e-49 199.1 133 76.7
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 2.6e-49 198.7 134 73.9
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 2.6e-49 198.7 134 73.9
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 2.6e-49 198.7 134 73.9
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 2.6e-49 198.7 134 73.1
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 2.6e-49 198.7 130 76.9
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 2.6e-49 198.7 133 74.4
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 4.5e-49 198.0 129 75.2
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 4.5e-49 198.0 129 76.7
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 4.5e-49 198.0 129 74.4
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 1.0e-48 196.8 129 73.6
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 1.0e-48 196.8 134 73.1
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.0e-48 196.8 132 75.0
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.3e-48 196.4 129 73.6
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 1.7e-48 196.1 129 75.2
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.2e-48 195.7 129 70.5
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.2e-48 195.7 133 75.2
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 2.2e-48 195.7 131 76.3
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 3.8e-48 194.9 130 74.6
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 5.0e-48 194.5 130 74.6
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.5e-47 193.0 121 76.0
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 4.2e-47 191.4 116 81.0
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 4.2e-47 191.4 110 80.9
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 4.2e-47 191.4 110 80.9
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 4.2e-47 191.4 118 79.7
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 9.4e-47 190.3 131 72.5
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 9.4e-47 190.3 145 70.3
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 2.7e-46 188.7 129 72.9
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 2.7e-46 188.7 125 72.0
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 1.4e-45 186.4 120 72.5
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 2.3e-45 185.7 137 70.8
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 5.2e-45 184.5 121 71.9
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 8.8e-45 183.7 121 75.2
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 1.2e-44 183.3 126 73.8
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.3e-43 179.9 121 73.6
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 1.8e-42 176.0 138 65.2
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 3.1e-42 175.3 129 65.9
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 2.2e-40 169.1 131 62.6
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 6.5e-40 167.5 122 67.2
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 9.4e-39 163.7 115 69.6
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 3.0e-37 158.7 91 83.5
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 1.2e-36 156.8 130 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.5e-36 156.4 114 69.3
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 2.5e-31 139.0 115 58.3
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 1.2e-28 130.2 75 82.7
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.0e-28 129.4 85 78.8
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 4.4e-28 128.3 78 78.2
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.8e-26 122.9 73 80.8
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.3e-24 115.9 73 78.1
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.8e-24 115.2 77 72.7
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 3.3e-23 112.1 74 71.6
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 6.1e-22 107.8 72 68.1
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 3.2e-18 95.5 56 82.1
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.6e-17 93.2 60 78.3
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 3.4e-12 75.5 50 70.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 1.3e-11 73.6 47 68.1
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 2.2e-11 72.8 95 36.8
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.0e-08 63.9 50 68.0


User provided reference genes

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