Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 2.4e-107 393.7 205 100.0
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 5.5e-51 206.5 206 54.9
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 6.8e-49 199.5 203 52.7
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 4.4e-48 196.8 199 54.3
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 5.7e-48 196.4 201 53.2
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 9.8e-48 195.7 205 51.2
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 2.2e-47 194.5 204 52.9
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.8e-47 194.1 192 56.8
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 3.7e-47 193.7 204 51.5
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 4.9e-47 193.4 192 56.8
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 6.3e-47 193.0 200 50.0
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.4e-46 191.8 192 56.2
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 2.4e-46 191.0 205 52.7
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 2.4e-46 191.0 206 50.5
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 3.1e-46 190.7 205 52.2
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 3.1e-46 190.7 201 49.3
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 4.1e-46 190.3 197 53.3
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.2e-45 188.7 192 55.7
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 1.6e-45 188.3 206 50.0
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 2.0e-45 188.0 206 49.0
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 2.7e-45 187.6 206 49.0
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 2.7e-45 187.6 206 49.0
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 5.9e-45 186.4 206 51.5
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 5.9e-45 186.4 200 49.5
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 7.7e-45 186.0 199 52.8
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 1.0e-44 185.7 206 48.5
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 1.7e-44 184.9 210 49.5
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 1.7e-44 184.9 194 50.5
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 2.9e-44 184.1 197 50.8
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 5.0e-44 183.3 200 49.0
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 5.0e-44 183.3 206 47.6
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 6.6e-44 183.0 206 50.0
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 6.6e-44 183.0 193 49.7
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 1.5e-43 181.8 200 49.0
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 1.9e-43 181.4 200 50.5
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 2.5e-43 181.0 193 51.3
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 3.3e-43 180.6 203 47.8
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 3.3e-43 180.6 203 47.3
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 3.3e-43 180.6 200 50.0
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 3.3e-43 180.6 201 48.8
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 4.2e-43 180.3 206 49.0
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 1.6e-42 178.3 200 49.5
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 1.6e-42 178.3 192 49.5
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 2.1e-42 177.9 197 47.2
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 2.8e-42 177.6 206 48.5
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.0e-41 175.6 183 53.6
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 1.0e-41 175.6 192 52.1
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 1.4e-41 175.3 206 48.5
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 1.4e-41 175.3 200 47.0
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 1.2e-40 172.2 198 46.0
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 3.4e-40 170.6 204 46.6
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 4.4e-40 170.2 201 45.8
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 7.5e-40 169.5 197 46.2
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 7.5e-40 169.5 197 46.2
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 7.5e-40 169.5 199 47.7
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 1.7e-39 168.3 207 46.9
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 6.4e-39 166.4 194 44.8
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 8.3e-39 166.0 191 49.7
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 8.3e-39 166.0 199 45.7
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 1.1e-38 165.6 197 44.7
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 1.8e-38 164.9 195 47.7
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 7.8e-37 159.5 153 55.6
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 6.2e-34 149.8 205 44.9
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 2.3e-33 147.9 203 43.8
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 5.2e-33 146.7 206 43.7
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 2.0e-32 144.8 184 47.8
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 4.9e-31 140.2 201 42.3
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 2.5e-27 127.9 108 59.3
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 1.8e-25 121.7 184 39.1
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 1.8e-25 121.7 201 36.8
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 1.8e-25 121.7 210 41.9
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 2.3e-25 121.3 208 40.4
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 4.0e-25 120.6 111 50.5
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 7.5e-24 116.3 172 41.9
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 1.4e-22 112.1 141 45.4
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 1.9e-19 101.7 203 32.0
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 1.9e-19 101.7 203 37.4
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 1.8e-17 95.1 85 52.9
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 4.0e-17 94.0 85 50.6
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 5.2e-17 93.6 139 41.0
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 1.2e-16 92.4 85 48.2
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 1.2e-16 92.4 85 48.2
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 1.5e-16 92.0 85 50.6
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 9.9e-16 89.4 85 48.2
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 7.3e-11 73.2 58 58.6
Lsat_1_v5_gn_9_22380 Lactuca sativa HOM05D007212 ORTHO05D009094 8.1e-10 69.7 203 30.0
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 1.1e-09 69.3 86 37.2
Sp7g19840 Schrenkiella parvula HOM05D000300 ORTHO05D000383 3.1e-09 67.8 96 39.6
Carub.0007s1970 Capsella rubella HOM05D000300 ORTHO05D000383 4.0e-09 67.4 96 39.6
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 5.2e-09 67.0 187 32.1
Potri.005G125400 Populus trichocarpa HOM05D000891 ORTHO05D000761 6.8e-09 66.6 111 37.8
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 6.8e-09 66.6 138 31.2
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 8.9e-09 66.2 190 28.9
Lalb_Chr09g0320271 Lupinus albus HOM05D000424 ORTHO05D000355 1.5e-08 65.5 172 27.3
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 2.0e-08 65.1 105 31.4
MELO3C017895.2 Cucumis melo HOM05D000891 ORTHO05D000761 2.6e-08 64.7 111 37.8
Thhalv10024998m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 3.4e-08 64.3 96 37.5
CsaV3_4G001450 Cucumis sativus L. HOM05D000891 ORTHO05D000761 4.4e-08 63.9 111 37.8
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 4.4e-08 63.9 111 35.1
MBI01_g37800_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 7.6e-08 63.2 111 33.3
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 7.6e-08 63.2 200 28.0
AT4G36680 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 9.9e-08 62.8 112 30.4
Duzib093G1185 Durio zibethinus HOM05D000424 ORTHO05D000355 9.9e-08 62.8 100 34.0
Duzib093G0352 Durio zibethinus HOM05D000424 ORTHO05D000355 1.3e-07 62.4 100 33.0
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 1.3e-07 62.4 187 31.0
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 1.3e-07 62.4 186 31.2
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.3e-07 62.4 200 27.5
Cpa.g.sc10.237 Carica papaya HOM05D000891 ORTHO05D000761 1.7e-07 62.0 111 35.1
Sp7g34340 Schrenkiella parvula HOM05D000891 ORTHO05D000761 2.9e-07 61.2 112 29.5
Sed0011714 Sechium edule HOM05D000891 ORTHO05D000761 4.9e-07 60.5 111 35.1
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 6.4e-07 60.1 185 24.9
Glyma.11G011600 Glycine max HOM05D000424 ORTHO05D000355 6.4e-07 60.1 171 25.7
SalBow3G0436 Salvia bowleyana HOM05D007212 ORTHO05D009094 6.4e-07 60.1 180 28.3
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 8.4e-07 59.7 112 29.5
COL.COLO4_12925 Corchorus olitorius HOM05D000891 ORTHO05D000761 8.4e-07 59.7 111 33.3
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 8.4e-07 59.7 192 27.1
Duzib192G0933 Durio zibethinus HOM05D000891 ORTHO05D000761 8.4e-07 59.7 111 31.5
Sabra05G0103000 Salix brachista HOM05D000891 ORTHO05D000761 8.4e-07 59.7 111 32.4
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 1.1e-06 59.3 150 26.7
C03p79970 Brassica napus HOM05D000891 ORTHO05D000761 1.1e-06 59.3 113 31.0
BolC3t20249H Brassica oleracea HOM05D000891 ORTHO05D000761 1.1e-06 59.3 113 31.0
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 1.1e-06 59.3 143 31.5
ATR0618G378 Amborella trichopoda HOM05D000891 ORTHO05D000761 1.4e-06 58.9 111 32.4
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 1.4e-06 58.9 171 29.2
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 1.4e-06 58.9 171 29.2
CSS0012921 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.4e-06 58.9 100 33.0
CSS0015280 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.4e-06 58.9 100 33.0
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 1.4e-06 58.9 179 26.8
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 1.4e-06 58.9 179 26.8
SalBow2G1681 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.4e-06 58.9 111 34.2
SalBow2G3131 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.4e-06 58.9 111 34.2
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 1.4e-06 58.9 125 28.8
BcaC01g00449 Brassica carinata HOM05D000891 ORTHO05D000761 1.9e-06 58.5 113 31.0
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 1.9e-06 58.5 112 30.4
Eucgr.C02447 Eucalyptus grandis HOM05D007455 ORTHO05D009431 1.9e-06 58.5 159 30.2
ATR0807G010 Amborella trichopoda HOM05D006556 ORTHO05D008146 2.4e-06 58.2 188 26.1
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 2.4e-06 58.2 186 23.7
DCAR_025500 Daucus carota HOM05D000891 ORTHO05D000761 2.4e-06 58.2 111 33.3
Sed0025653 Sechium edule HOM05D000891 ORTHO05D000761 2.4e-06 58.2 111 34.2
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 3.2e-06 57.8 171 28.7
Carub.0007s0364 Capsella rubella HOM05D000891 ORTHO05D000761 3.2e-06 57.8 112 29.5
Thhalv10027579m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 3.2e-06 57.8 112 29.5
MD17G1208400 Malus domestica HOM05D000891 ORTHO05D000761 3.2e-06 57.8 111 31.5
SalBow2G3114 Salvia bowleyana HOM05D000162 ORTHO05D000090 3.2e-06 57.8 148 29.1
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 3.2e-06 57.8 111 27.9
Atru.chr3.2773 Acer truncatum HOM05D007455 ORTHO05D009431 4.2e-06 57.4 121 32.2
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 4.2e-06 57.4 171 28.7
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 4.2e-06 57.4 171 28.7
BraA08t34190Z Brassica rapa HOM05D000891 ORTHO05D000761 4.2e-06 57.4 113 30.1
CSS0003198 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 4.2e-06 57.4 96 33.3
Duzib147G0693 Durio zibethinus HOM05D000891 ORTHO05D000761 4.2e-06 57.4 112 30.4
Thhalv10018671m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 4.2e-06 57.4 111 34.2
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 4.2e-06 57.4 171 26.9
THA.LOC104812946 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 4.2e-06 57.4 179 27.4
THA.LOC104812960 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 4.2e-06 57.4 179 27.4
TWI53G1937 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 4.2e-06 57.4 111 33.3
TWI75G1584 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 4.2e-06 57.4 111 31.5
HPP92_020726 Vanilla planifolia HOM05D000891 ORTHO05D000761 4.2e-06 57.4 111 34.2
A08p22340 Brassica napus HOM05D000891 ORTHO05D000761 5.4e-06 57.0 113 30.1
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 5.4e-06 57.0 110 28.2
MELO3C015131.2 Cucumis melo HOM05D007455 ORTHO05D009431 5.4e-06 57.0 143 30.8
Gohir.A02G110000 Gossypium hirsutum HOM05D000424 ORTHO05D000355 5.4e-06 57.0 97 33.0
PGR142G0525 Punica granatum HOM05D000891 ORTHO05D000761 5.4e-06 57.0 111 33.3
TAR626G0825 Trochodendron aralioides HOM05D000891 ORTHO05D000761 5.4e-06 57.0 111 32.4
EL10Ac7g15952 Beta vulgaris HOM05D000970 ORTHO05D000788 7.1e-06 56.6 181 29.3
Cc04_g04200 Coffea canephora HOM05D000891 ORTHO05D000761 7.1e-06 56.6 111 35.1
Haze_16531 Corylus avellana HOM05D006819 ORTHO05D008763 7.1e-06 56.6 111 33.3
FvH4_6g30020 Fragaria vesca HOM05D000891 ORTHO05D000761 7.1e-06 56.6 111 29.7
FAN05G1392 Fragaria x ananassa HOM05D000891 ORTHO05D000761 7.1e-06 56.6 111 29.7
FAN09G4590 Fragaria x ananassa HOM05D000891 ORTHO05D000761 7.1e-06 56.6 111 29.7
Lj3g0025740 Lotus japonicus HOM05D007212 ORTHO05D009094 7.1e-06 56.6 206 28.6
RcHm_v2.0_Chr5g0062521 Rosa chinensis HOM05D004271 ORTHO05D006011 7.1e-06 56.6 196 28.6
A09p11950 Brassica napus HOM05D000891 ORTHO05D000761 9.3e-06 56.2 190 27.9
Cpa.g.sc84.2 Carica papaya HOM05D007455 ORTHO05D009431 9.3e-06 56.2 123 31.7
Cfa001982 Carpinus fangiana HOM05D000891 ORTHO05D000761 9.3e-06 56.2 111 33.3
Dinv36177 Davidia involucrata HOM05D007455 ORTHO05D009431 9.3e-06 56.2 123 32.5
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 9.3e-06 56.2 110 30.9
Medtr2g072170 Medicago truncatula HOM05D007085 ORTHO05D008828 9.3e-06 56.2 159 30.8
Thecc.03G000200 Theobroma cacao HOM05D000891 ORTHO05D000761 9.3e-06 56.2 111 30.6


User provided reference genes

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