Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 1.4e-34 149.1 73 100.0
Lsat_1_v5_gn_9_23460 Lactuca sativa HOM05D002160 ORTHO05D002012 2.1e-19 98.6 78 65.4
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 4.7e-19 97.4 78 67.9
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 4.7e-19 97.4 78 67.9
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 4.7e-19 97.4 78 67.9
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 8.0e-19 96.7 78 65.4
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 2.3e-18 95.1 78 66.7
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 1.2e-17 92.8 78 61.5
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.2e-17 92.8 79 63.3
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 5.7e-17 90.5 79 64.6
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 7.5e-17 90.1 79 67.1
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.2e-16 88.6 79 65.8
ECA236G3652 Erigeron canadensis HOM05D002160 ORTHO05D002012 1.1e-15 86.3 79 58.2
DCAR_018908 Daucus carota HOM05D002160 ORTHO05D002012 2.4e-15 85.1 78 61.5
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 4.1e-15 84.3 66 69.7
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 9.2e-15 83.2 79 60.8
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 9.2e-15 83.2 79 62.0
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 5.9e-14 80.5 80 62.5
Lsat_1_v5_gn_8_73001 Lactuca sativa HOM05D002160 ORTHO05D002012 5.9e-14 80.5 56 58.9
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.3e-13 79.3 81 53.1
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.9e-13 78.2 59 62.7
Solyc06g005465.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.9e-13 78.2 78 61.5
CSS0041767 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 3.9e-13 77.8 64 68.8
Nitab4.5_0000317g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 3.9e-13 77.8 101 49.5
Sopen06g001440 Solanum pennellii HOM05D002160 ORTHO05D002012 3.9e-13 77.8 59 61.0
CSS0020810 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 5.0e-13 77.4 68 69.1
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 6.6e-13 77.0 78 57.7
CSS0041171 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 8.6e-13 76.6 68 69.1
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.9e-12 75.5 79 59.5
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.9e-12 75.5 75 54.7
Nitab4.5_0022803g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 1.9e-12 75.5 76 61.8
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 3.3e-12 74.7 80 57.5
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 3.3e-12 74.7 80 57.5
CAN.G111.42 Capsicum annuum HOM05D002160 ORTHO05D002012 4.3e-12 74.3 78 60.3
Oeu051437.1 Olea europaea HOM05D002160 ORTHO05D002012 4.3e-12 74.3 66 56.1
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 5.6e-12 73.9 75 53.3
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 7.3e-12 73.6 79 59.5
SalBow3G1981 Salvia bowleyana HOM05D002160 ORTHO05D002012 9.5e-12 73.2 70 57.1
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 9.5e-12 73.2 80 51.2
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 1.6e-11 72.4 81 56.8
Nitab4.5_0002557g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.1e-11 72.0 77 58.4
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 2.1e-11 72.0 78 60.3
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 3.6e-11 71.2 80 60.0
HanXRQChr08g0235781 Helianthus annuus HOM05D002160 ORTHO05D002012 3.6e-11 71.2 67 65.7
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 4.7e-11 70.9 79 58.2
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 6.1e-11 70.5 78 59.0
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 6.1e-11 70.5 79 54.4
CAN.G405.1 Capsicum annuum HOM05D002160 ORTHO05D002012 8.0e-11 70.1 77 55.8
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 8.0e-11 70.1 79 57.0
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 8.0e-11 70.1 82 54.9
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 1.0e-10 69.7 79 57.0
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 1.0e-10 69.7 78 57.7
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.4e-10 69.3 77 57.1
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 1.4e-10 69.3 77 57.1
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.3e-10 68.6 79 55.7
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.3e-10 68.6 79 55.7
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.3e-10 68.6 79 57.0
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 4.0e-10 67.8 79 55.7
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 4.0e-10 67.8 79 55.7
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.2e-10 67.4 79 54.4
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 6.8e-10 67.0 77 55.8
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 6.8e-10 67.0 79 54.4
Os12g0571100 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 6.8e-10 67.0 77 48.1
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 6.8e-10 67.0 79 57.0
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.9e-10 66.6 83 51.8
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 1.2e-09 66.2 80 55.0
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.2e-09 66.2 77 51.9
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.2e-09 66.2 81 54.3
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.2e-09 66.2 76 55.3
Sopen04g025910 Solanum pennellii HOM05D002160 ORTHO05D002012 1.2e-09 66.2 77 53.2
Sopen06g032540 Solanum pennellii HOM05D002160 ORTHO05D002012 1.5e-09 65.9 80 56.2
Oeu053915.1 Olea europaea HOM05D022828 ORTHO05D002012 2.0e-09 65.5 53 58.5
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.6e-09 65.1 77 50.6
Nitab4.5_0003635g0040 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.6e-09 65.1 68 48.5
Os12g0567800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.6e-09 65.1 77 46.8
Solyc04g058150.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 3.4e-09 64.7 77 54.5
Sopen04g026050 Solanum pennellii HOM05D002160 ORTHO05D002012 3.4e-09 64.7 77 54.5
Solyc04g058100.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 4.4e-09 64.3 77 51.9
PGSC0003DMG400030321 Solanum tuberosum HOM05D002160 ORTHO05D002012 4.4e-09 64.3 77 54.5
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 5.8e-09 63.9 79 55.7
Migut.D02103 Erythranthe guttata HOM05D022828 ORTHO05D002012 7.5e-09 63.5 53 56.6
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 9.8e-09 63.2 79 53.2
Manes.01G174400 Manihot esculenta HOM05D002160 ORTHO05D002012 1.3e-08 62.8 77 53.2
Manes.01G174200 Manihot esculenta HOM05D002160 ORTHO05D002012 1.7e-08 62.4 77 53.2
GSVIVG01024970001 Vitis vinifera HOM05D002160 ORTHO05D002012 2.2e-08 62.0 87 55.2
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 2.9e-08 61.6 55 58.2
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 3.7e-08 61.2 70 50.0
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 4.9e-08 60.8 81 53.1
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 4.9e-08 60.8 54 53.7
Manes.02G133200 Manihot esculenta HOM05D002160 ORTHO05D002012 4.9e-08 60.8 77 53.2
Manes.07G091300 Manihot esculenta HOM05D002160 ORTHO05D002012 4.9e-08 60.8 77 51.9
Solyc06g076140.4 Solanum lycopersicum HOM05D002160 ORTHO05D002012 4.9e-08 60.8 77 51.9
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 6.4e-08 60.5 78 52.6
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 6.4e-08 60.5 78 52.6
Haze_24095 Corylus avellana HOM05D002160 ORTHO05D002012 6.4e-08 60.5 47 57.4
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 6.4e-08 60.5 55 54.5
Os12g0568200 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 6.4e-08 60.5 78 38.5
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 6.4e-08 60.5 79 53.2
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 8.3e-08 60.1 79 57.0
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 8.3e-08 60.1 79 50.6
Migut.D02104 Erythranthe guttata HOM05D022828 ORTHO05D002012 1.1e-07 59.7 53 54.7
Os12g0568500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 1.1e-07 59.7 82 42.7
Os12g0570700 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 3.2e-07 58.2 79 50.6
Hund10660 Selenicereus undatus HOM05D002160 ORTHO05D002012 3.2e-07 58.2 55 45.5
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.1e-07 57.8 49 59.2
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.4e-07 57.4 49 59.2
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.4e-07 57.4 49 59.2
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 5.4e-07 57.4 49 59.2
Medtr4g021725 Medicago truncatula HOM05D002160 ORTHO05D002012 7.0e-07 57.0 48 56.2
Rhsim13G0082700 Rhododendron simsii HOM05D002160 ORTHO05D002012 9.2e-07 56.6 43 62.8
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 2.0e-06 55.5 79 48.1
Glyma.17G230500 Glycine max HOM05D002160 ORTHO05D002012 2.0e-06 55.5 48 54.2
PGR102G1600 Punica granatum HOM05D002160 ORTHO05D002012 2.0e-06 55.5 52 48.1
Prupe.6G077900 Prunus persica HOM05D002160 ORTHO05D002012 2.7e-06 55.1 54 50.0
CDE08G0642 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 3.5e-06 54.7 80 48.8
Ca_03759_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 3.5e-06 54.7 45 55.6
PSO339G1859 Papaver somniferum HOM05D002160 ORTHO05D002012 3.5e-06 54.7 71 57.7
Medtr4g021730 Medicago truncatula HOM05D002160 ORTHO05D002012 4.6e-06 54.3 47 55.3
CSS0046936 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 6.0e-06 53.9 55 50.9
CSS0049920 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 6.0e-06 53.9 55 50.9
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 6.0e-06 53.9 79 50.6
Ca_03760_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 6.0e-06 53.9 45 55.6
COL.COLO4_19168 Corchorus olitorius HOM05D002160 ORTHO05D002012 6.0e-06 53.9 49 53.1
FAN21G3063 Fragaria x ananassa HOM05D015563 ORTHO05D002012 6.0e-06 53.9 51 47.1
PSO151G0128 Papaver somniferum HOM05D002160 ORTHO05D002012 6.0e-06 53.9 71 56.3
Glyma.14G093100 Glycine max HOM05D002160 ORTHO05D002012 7.8e-06 53.5 48 54.2
Os11g0704500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 7.8e-06 53.5 55 45.5
Psat7g239160 Pisum sativum HOM05D002160 ORTHO05D002012 7.8e-06 53.5 47 53.2


User provided reference genes

Program Settings