Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12620 Coffea canephora HOM05D006284 ORTHO05D007793 1.4e-43 179.1 86 100.0
MD11G1144900 Malus domestica HOM05D006284 ORTHO05D007793 4.7e-10 67.8 36 83.3
Atru.chr3.3846 Acer truncatum HOM05D006284 ORTHO05D007793 1.4e-09 66.2 33 90.9
CiPaw.13G097000 Carya illinoinensis HOM05D006284 ORTHO05D007793 1.4e-09 66.2 35 85.7
Haze_24061 Corylus avellana HOM05D006284 ORTHO05D007793 1.4e-09 66.2 35 82.9
GSVIVG01025000001 Vitis vinifera HOM05D006284 ORTHO05D007793 1.4e-09 66.2 35 85.7
Oeu041449.2 Olea europaea HOM05D006284 ORTHO05D007793 2.3e-09 65.5 42 76.2
TAR623G0100 Trochodendron aralioides HOM05D006284 ORTHO05D007793 6.8e-09 63.9 34 85.3
vmacro14530 Vaccinium macrocarpon HOM05D006284 ORTHO05D007793 6.8e-09 63.9 35 80.0
MBI14_g11686_MAGBIO Magnolia biondii HOM05D006284 ORTHO05D007793 8.9e-09 63.5 34 85.3
Prupe.6G080800 Prunus persica HOM05D006284 ORTHO05D007793 8.9e-09 63.5 34 85.3
QL01p032751 Quercus lobata HOM05D006284 ORTHO05D007793 1.2e-08 63.2 33 84.8
Oeu056746.1 Olea europaea HOM05D006284 ORTHO05D007793 1.5e-08 62.8 48 68.8
Rhsim01G0226200 Rhododendron simsii HOM05D006284 ORTHO05D007793 2.6e-08 62.0 35 77.1
Eucgr.B02382 Eucalyptus grandis HOM05D006284 ORTHO05D007793 3.4e-08 61.6 34 79.4
PGR102G0171 Punica granatum HOM05D006284 ORTHO05D007793 3.4e-08 61.6 48 58.3
Cpa.g.sc190.6 Carica papaya HOM05D006284 ORTHO05D007793 5.7e-08 60.8 35 77.1
Dinv03613 Davidia involucrata HOM05D006284 ORTHO05D007793 5.7e-08 60.8 35 77.1
Glyma.12G064500 Glycine max HOM05D006284 ORTHO05D007793 5.7e-08 60.8 33 84.8
EL10Ac7g15985 Beta vulgaris HOM05D006284 ORTHO05D007793 7.5e-08 60.5 33 75.8
Medtr4g063500 Medicago truncatula HOM05D006284 ORTHO05D007793 7.5e-08 60.5 34 76.5
Sabra16G0143200 Salix brachista HOM05D006284 ORTHO05D007793 7.5e-08 60.5 35 77.1
HanXRQChr15g0493271 Helianthus annuus HOM05D006284 ORTHO05D007793 9.8e-08 60.1 31 87.1
Oeu056739.1 Olea europaea HOM05D006284 ORTHO05D007793 9.8e-08 60.1 48 64.6
Potri.001G237500 Populus trichocarpa HOM05D006284 ORTHO05D007793 1.3e-07 59.7 36 72.2
CSS0000036 Camellia sinensis var. sinensis HOM05D006284 ORTHO05D007793 1.7e-07 59.3 35 74.3
CANSAT54G2008 Cannabis sativa HOM05D006284 ORTHO05D007793 1.7e-07 59.3 33 81.8
Gohir.A07G096400 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.7e-07 59.3 55 54.5
RcHm_v2.0_Chr5g0063801 Rosa chinensis HOM05D006284 ORTHO05D007793 2.2e-07 58.9 33 84.8
AUR62009602 Chenopodium quinoa HOM05D006284 ORTHO05D007793 2.8e-07 58.5 33 75.8
DCAR_018897 Daucus carota HOM05D006284 ORTHO05D007793 2.8e-07 58.5 44 65.9
Lalb_Chr01g0003741 Lupinus albus HOM05D006284 ORTHO05D007793 2.8e-07 58.5 32 84.4
PSO339G4936 Papaver somniferum HOM05D006284 ORTHO05D007793 2.8e-07 58.5 38 73.7
PSO384G0339 Papaver somniferum HOM05D006284 ORTHO05D007793 2.8e-07 58.5 38 73.7
TPR.G10968 Trifolium pratense HOM05D006284 ORTHO05D007793 2.8e-07 58.5 32 81.2
Actinidia33860 Actinidia chinensis HOM05D006284 ORTHO05D007793 3.7e-07 58.2 32 84.4
Ca_19180_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 4.9e-07 57.8 34 73.5
Ca_31183_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 4.9e-07 57.8 34 73.5
DCAR_015613 Daucus carota HOM05D006284 ORTHO05D007793 4.9e-07 57.8 33 78.8
ECA247G3393 Erigeron canadensis HOM05D006284 ORTHO05D007793 4.9e-07 57.8 32 81.2
Migut.L00518 Erythranthe guttata HOM05D006284 ORTHO05D007793 4.9e-07 57.8 30 86.7
FvH4_3g35610 Fragaria vesca HOM05D006284 ORTHO05D007793 4.9e-07 57.8 33 81.8
FAN11G1150 Fragaria x ananassa HOM05D006284 ORTHO05D007793 4.9e-07 57.8 33 81.8
FAN16G2200 Fragaria x ananassa HOM05D006284 ORTHO05D007793 4.9e-07 57.8 33 81.8
FAN21G0749 Fragaria x ananassa HOM05D006284 ORTHO05D007793 4.9e-07 57.8 33 81.8
Sed0023805 Sechium edule HOM05D006284 ORTHO05D007793 4.9e-07 57.8 33 75.8
THA.LOC104800652 Tarenaya hassleriana HOM05D006284 ORTHO05D007793 4.9e-07 57.8 44 63.6
Aqoxy4G02964 Aquilegia oxysepala HOM05D006284 ORTHO05D007793 6.3e-07 57.4 50 56.0
arahy.Tifrunner.gnm1.ann1.6H51DS Arachis hypogaea HOM05D006284 ORTHO05D007793 6.3e-07 57.4 33 78.8
arahy.Tifrunner.gnm1.ann1.W3SBYC Arachis hypogaea HOM05D006284 ORTHO05D007793 6.3e-07 57.4 33 78.8
BraA06t23686Z Brassica rapa HOM05D006284 ORTHO05D007793 6.3e-07 57.4 35 74.3
CsaV3_6G017010 Cucumis sativus L. HOM05D006284 ORTHO05D007793 6.3e-07 57.4 33 78.8
TWI79G0071 Tripterygium wilfordii HOM05D006284 ORTHO05D007793 6.3e-07 57.4 34 76.5
ATR0559G308 Amborella trichopoda HOM05D006284 ORTHO05D007793 8.3e-07 57.0 29 86.2
Os03g0277500 Oryza sativa ssp. japonica HOM05D006284 ORTHO05D007793 8.3e-07 57.0 41 61.0
Phvul.011G065500 Phaseolus vulgaris HOM05D006284 ORTHO05D007793 8.3e-07 57.0 33 78.8
SGA_v2.0_scaffold606G53170 Striga asiatica HOM05D006284 ORTHO05D007793 8.3e-07 57.0 31 80.6
VMungo1127G1430 Vigna mungo HOM05D006284 ORTHO05D007793 8.3e-07 57.0 33 78.8
Nitab4.5_0001304g0050 Nicotiana tabacum HOM05D006284 ORTHO05D007793 1.1e-06 56.6 32 78.1
Sp1g06380 Schrenkiella parvula HOM05D006284 ORTHO05D007793 1.1e-06 56.6 30 83.3
Aa31sc281G30 Aethionema arabicum HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
AL1G17850 Arabidopsis lyrata HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
BcaC07g41981 Brassica carinata HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
BcaC07g42490 Brassica carinata HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
BcaC07g42491 Brassica carinata HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
BcaC07g42493 Brassica carinata HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
A06p04820 Brassica napus HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
A09p66230 Brassica napus HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
C05p05670 Brassica napus HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
C08p50410 Brassica napus HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
BolC5t29337H Brassica oleracea HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
BolC8t52569H Brassica oleracea HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
BraA09t41961Z Brassica rapa HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
CARHR007450 Cardamine hirsuta HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
Thhalv10009069m.g Eutrema salsugineum HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 83.3
Hma1.2p1_1897F.1_g306861 Hydrangea macrophylla HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 86.7
Lj2A1058T40 Lonicera japonica HOM05D006284 ORTHO05D007793 1.4e-06 56.2 30 86.7
AUR62001816 Chenopodium quinoa HOM05D006284 ORTHO05D007793 1.8e-06 55.8 32 75.0
ClCG02G020310 Citrullus lanatus HOM05D006284 ORTHO05D007793 1.8e-06 55.8 33 75.8
Carub.0001s0699 Capsella rubella HOM05D006284 ORTHO05D007793 2.4e-06 55.5 30 83.3
Manes.11G132300 Manihot esculenta HOM05D006284 ORTHO05D007793 3.1e-06 55.1 33 72.7
Peaxi162Scf00406g00314 Petunia axillaris HOM05D006284 ORTHO05D007793 3.1e-06 55.1 31 77.4
Psat7g217680 Pisum sativum HOM05D006284 ORTHO05D007793 3.1e-06 55.1 32 78.1
SalBow5G5166 Salvia bowleyana HOM05D006284 ORTHO05D007793 3.1e-06 55.1 30 80.0
AT1G07645 Arabidopsis thaliana HOM05D006284 ORTHO05D007793 4.1e-06 54.7 30 80.0
MELO3C013690.2 Cucumis melo HOM05D006284 ORTHO05D007793 4.1e-06 54.7 33 72.7
Duzib168G1259 Durio zibethinus HOM05D006284 ORTHO05D007793 4.1e-06 54.7 36 66.7
MSTRG.15272 Avicennia marina HOM05D006284 ORTHO05D007793 5.4e-06 54.3 30 83.3
Nitab4.5_0001838g0030 Nicotiana tabacum HOM05D006284 ORTHO05D007793 5.4e-06 54.3 32 71.9
SMO165G0091 Selaginella moellendorffii HOM05D006284 ORTHO05D007793 9.2e-06 53.5 33 63.6


User provided reference genes

Program Settings