Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12610 Coffea canephora HOM05D006284 ORTHO05D007793 7.7e-21 102.8 50 100.0
AL1G17850 Arabidopsis lyrata HOM05D006284 ORTHO05D007793 3.3e-16 87.4 49 81.6
AT1G07645 Arabidopsis thaliana HOM05D006284 ORTHO05D007793 3.3e-16 87.4 49 81.6
BcaC07g41981 Brassica carinata HOM05D006284 ORTHO05D007793 3.3e-16 87.4 49 81.6
BcaC07g42491 Brassica carinata HOM05D006284 ORTHO05D007793 3.3e-16 87.4 49 81.6
BcaC07g42493 Brassica carinata HOM05D006284 ORTHO05D007793 3.3e-16 87.4 49 81.6
A09p66230 Brassica napus HOM05D006284 ORTHO05D007793 3.3e-16 87.4 49 81.6
C08p50410 Brassica napus HOM05D006284 ORTHO05D007793 3.3e-16 87.4 49 81.6
BolC8t52569H Brassica oleracea HOM05D006284 ORTHO05D007793 3.3e-16 87.4 49 81.6
BraA09t41961Z Brassica rapa HOM05D006284 ORTHO05D007793 3.3e-16 87.4 49 81.6
Thhalv10009069m.g Eutrema salsugineum HOM05D006284 ORTHO05D007793 3.3e-16 87.4 49 81.6
Haze_24061 Corylus avellana HOM05D006284 ORTHO05D007793 7.4e-16 86.3 44 90.9
Carub.0001s0699 Capsella rubella HOM05D006284 ORTHO05D007793 9.7e-16 85.9 49 79.6
C05p05670 Brassica napus HOM05D006284 ORTHO05D007793 1.3e-15 85.5 49 79.6
BolC5t29337H Brassica oleracea HOM05D006284 ORTHO05D007793 1.3e-15 85.5 49 79.6
A06p04820 Brassica napus HOM05D006284 ORTHO05D007793 1.7e-15 85.1 49 79.6
BraA06t23686Z Brassica rapa HOM05D006284 ORTHO05D007793 1.7e-15 85.1 49 79.6
QL01p032751 Quercus lobata HOM05D006284 ORTHO05D007793 1.7e-15 85.1 44 88.6
CARHR007450 Cardamine hirsuta HOM05D006284 ORTHO05D007793 2.2e-15 84.7 49 77.6
PSO339G4936 Papaver somniferum HOM05D006284 ORTHO05D007793 2.2e-15 84.7 44 88.6
CiPaw.13G097000 Carya illinoinensis HOM05D006284 ORTHO05D007793 2.8e-15 84.3 44 88.6
Hma1.2p1_1897F.1_g306861 Hydrangea macrophylla HOM05D006284 ORTHO05D007793 2.8e-15 84.3 44 88.6
Aqoxy4G02964 Aquilegia oxysepala HOM05D006284 ORTHO05D007793 3.7e-15 84.0 44 88.6
Sp1g06380 Schrenkiella parvula HOM05D006284 ORTHO05D007793 6.3e-15 83.2 49 77.6
Atru.chr3.3846 Acer truncatum HOM05D006284 ORTHO05D007793 8.2e-15 82.8 44 86.4
vmacro14530 Vaccinium macrocarpon HOM05D006284 ORTHO05D007793 1.1e-14 82.4 44 84.1
Cpa.g.sc190.6 Carica papaya HOM05D006284 ORTHO05D007793 1.4e-14 82.0 42 88.1
Dinv03613 Davidia involucrata HOM05D006284 ORTHO05D007793 1.4e-14 82.0 44 86.4
Duzib168G1259 Durio zibethinus HOM05D006284 ORTHO05D007793 1.8e-14 81.6 44 81.8
COL.COLO4_18479 Corchorus olitorius HOM05D006284 ORTHO05D007793 2.4e-14 81.3 44 79.5
PSO384G0339 Papaver somniferum HOM05D006284 ORTHO05D007793 2.4e-14 81.3 44 86.4
Aa31sc281G30 Aethionema arabicum HOM05D006284 ORTHO05D007793 5.3e-14 80.1 44 81.8
Manes.11G132300 Manihot esculenta HOM05D006284 ORTHO05D007793 5.3e-14 80.1 49 73.5
THA.LOC104800652 Tarenaya hassleriana HOM05D006284 ORTHO05D007793 5.3e-14 80.1 44 79.5
Thecc.09G324900 Theobroma cacao HOM05D006284 ORTHO05D007793 5.3e-14 80.1 44 81.8
TAR623G0100 Trochodendron aralioides HOM05D006284 ORTHO05D007793 5.3e-14 80.1 49 79.6
ECA247G3393 Erigeron canadensis HOM05D006284 ORTHO05D007793 6.9e-14 79.7 44 81.8
Actinidia33860 Actinidia chinensis HOM05D006284 ORTHO05D007793 9.1e-14 79.3 49 75.5
arahy.Tifrunner.gnm1.ann1.6H51DS Arachis hypogaea HOM05D006284 ORTHO05D007793 9.1e-14 79.3 44 81.8
arahy.Tifrunner.gnm1.ann1.W3SBYC Arachis hypogaea HOM05D006284 ORTHO05D007793 9.1e-14 79.3 44 81.8
Psat7g217680 Pisum sativum HOM05D006284 ORTHO05D007793 9.1e-14 79.3 49 73.5
BcaC07g42490 Brassica carinata HOM05D006284 ORTHO05D007793 1.2e-13 79.0 50 78.0
Rhsim01G0226200 Rhododendron simsii HOM05D006284 ORTHO05D007793 1.2e-13 79.0 44 81.8
SalBow5G5166 Salvia bowleyana HOM05D006284 ORTHO05D007793 1.2e-13 79.0 44 79.5
Lj3g0026697 Lotus japonicus HOM05D006284 ORTHO05D007793 2.0e-13 78.2 44 77.3
EL10Ac7g15985 Beta vulgaris HOM05D006284 ORTHO05D007793 2.6e-13 77.8 44 81.8
HanXRQChr15g0493271 Helianthus annuus HOM05D006284 ORTHO05D007793 2.6e-13 77.8 44 79.5
Lsat_1_v5_gn_5_183840 Lactuca sativa HOM05D006284 ORTHO05D007793 2.6e-13 77.8 44 79.5
Medtr4g063500 Medicago truncatula HOM05D006284 ORTHO05D007793 2.6e-13 77.8 44 79.5
TWI79G0071 Tripterygium wilfordii HOM05D006284 ORTHO05D007793 2.6e-13 77.8 43 83.7
Ca_19180_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 7.7e-13 76.3 49 73.5
Ca_31183_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 7.7e-13 76.3 49 73.5
FAN11G1150 Fragaria x ananassa HOM05D006284 ORTHO05D007793 7.7e-13 76.3 44 75.0
FAN21G0749 Fragaria x ananassa HOM05D006284 ORTHO05D007793 7.7e-13 76.3 44 75.0
RcHm_v2.0_Chr5g0063801 Rosa chinensis HOM05D006284 ORTHO05D007793 7.7e-13 76.3 44 77.3
GSVIVG01025000001 Vitis vinifera HOM05D006284 ORTHO05D007793 7.7e-13 76.3 43 81.4
FAN16G2200 Fragaria x ananassa HOM05D006284 ORTHO05D007793 1.0e-12 75.9 44 75.0
Lsat_1_v5_gn_9_22581 Lactuca sativa HOM05D006284 ORTHO05D007793 1.0e-12 75.9 44 79.5
TPR.G10205 Trifolium pratense HOM05D006284 ORTHO05D007793 1.0e-12 75.9 41 82.9
MSTRG.15272 Avicennia marina HOM05D006284 ORTHO05D007793 1.3e-12 75.5 44 79.5
PGR102G0171 Punica granatum HOM05D006284 ORTHO05D007793 1.3e-12 75.5 44 75.0
SGA_v2.0_scaffold606G53170 Striga asiatica HOM05D006284 ORTHO05D007793 1.3e-12 75.5 46 71.7
CAN.G394.47 Capsicum annuum HOM05D006284 ORTHO05D007793 1.7e-12 75.1 44 77.3
Oeu056758.1 Olea europaea HOM05D006284 ORTHO05D007793 1.7e-12 75.1 44 79.5
Solyc06g075990.4 Solanum lycopersicum HOM05D006284 ORTHO05D007793 1.7e-12 75.1 44 77.3
Sopen06g032410 Solanum pennellii HOM05D006284 ORTHO05D007793 1.7e-12 75.1 44 77.3
PGSC0003DMG400030315 Solanum tuberosum HOM05D006284 ORTHO05D007793 1.7e-12 75.1 44 77.3
Eucgr.B02382 Eucalyptus grandis HOM05D006284 ORTHO05D007793 2.2e-12 74.7 44 75.0
Nitab4.5_0001304g0050 Nicotiana tabacum HOM05D006284 ORTHO05D007793 2.2e-12 74.7 44 75.0
Peaxi162Scf00679g00212 Petunia axillaris HOM05D006284 ORTHO05D007793 2.2e-12 74.7 44 75.0
Potri.001G237500 Populus trichocarpa HOM05D006284 ORTHO05D007793 2.2e-12 74.7 44 75.0
Sabra16G0143200 Salix brachista HOM05D006284 ORTHO05D007793 2.9e-12 74.3 44 77.3
Migut.L00518 Erythranthe guttata HOM05D006284 ORTHO05D007793 3.8e-12 73.9 44 77.3
Migut.L00567 Erythranthe guttata HOM05D006284 ORTHO05D007793 3.8e-12 73.9 44 77.3
Lalb_Chr01g0003741 Lupinus albus HOM05D006284 ORTHO05D007793 3.8e-12 73.9 44 79.5
Oeu041449.2 Olea europaea HOM05D006284 ORTHO05D007793 3.8e-12 73.9 44 79.5
Oeu033642.1 Olea europaea HOM05D006284 ORTHO05D007793 5.0e-12 73.6 43 76.7
Os03g0277500 Oryza sativa ssp. japonica HOM05D006284 ORTHO05D007793 5.0e-12 73.6 44 72.7
Gohir.A05G097100 Gossypium hirsutum HOM05D006284 ORTHO05D007793 6.5e-12 73.2 44 72.7
Gorai.009G100800 Gossypium raimondii HOM05D006284 ORTHO05D007793 6.5e-12 73.2 44 72.7
Nitab4.5_0001838g0030 Nicotiana tabacum HOM05D006284 ORTHO05D007793 6.5e-12 73.2 42 76.2
Oeu056746.1 Olea europaea HOM05D006284 ORTHO05D007793 6.5e-12 73.2 44 77.3
SHI00991 Sapria himalayana HOM05D006284 ORTHO05D007793 1.4e-11 72.0 43 74.4
ClCG02G020310 Citrullus lanatus HOM05D006284 ORTHO05D007793 2.5e-11 71.2 44 72.7
Ciclev10029580m.g Citrus clementina HOM05D006284 ORTHO05D007793 2.5e-11 71.2 49 71.4
MELO3C013690.2 Cucumis melo HOM05D006284 ORTHO05D007793 3.2e-11 70.9 44 70.5
DCAR_015613 Daucus carota HOM05D006284 ORTHO05D007793 4.2e-11 70.5 43 76.7
Gorai.001G108700 Gossypium raimondii HOM05D006284 ORTHO05D007793 4.2e-11 70.5 44 75.0
Sed0023805 Sechium edule HOM05D006284 ORTHO05D007793 4.2e-11 70.5 42 76.2
VMungo1127G1430 Vigna mungo HOM05D006284 ORTHO05D007793 4.2e-11 70.5 42 73.8
Prupe.6G080800 Prunus persica HOM05D006284 ORTHO05D007793 5.5e-11 70.1 40 75.0
Sc06g0008270 Simmondsia chinensis HOM05D006284 ORTHO05D007793 5.5e-11 70.1 44 70.5
Gohir.D05G097250 Gossypium hirsutum HOM05D006284 ORTHO05D007793 7.2e-11 69.7 45 66.7
CANSAT54G2008 Cannabis sativa HOM05D006284 ORTHO05D007793 9.4e-11 69.3 44 72.7
Phvul.011G065500 Phaseolus vulgaris HOM05D006284 ORTHO05D007793 9.4e-11 69.3 42 73.8
SEGI_15500 Sequoiadendron giganteum HOM05D006284 ORTHO05D007793 9.4e-11 69.3 43 72.1
AUR62009602 Chenopodium quinoa HOM05D006284 ORTHO05D007793 1.2e-10 68.9 44 68.2
MD11G1144900 Malus domestica HOM05D006284 ORTHO05D007793 1.2e-10 68.9 40 75.0
AUR62001816 Chenopodium quinoa HOM05D006284 ORTHO05D007793 1.6e-10 68.6 44 68.2
Glyma.12G064500 Glycine max HOM05D006284 ORTHO05D007793 2.1e-10 68.2 42 71.4
MD07G1053700 Malus domestica HOM05D006284 ORTHO05D007793 2.7e-10 67.8 40 72.5
CsaV3_6G017010 Cucumis sativus L. HOM05D006284 ORTHO05D007793 1.0e-09 65.9 44 65.9
MD14G1025700 Malus domestica HOM05D006284 ORTHO05D007793 2.3e-09 64.7 40 67.5
FAN11G3292 Fragaria x ananassa HOM05D006284 ORTHO05D007793 3.3e-08 60.8 37 70.3
AagrBONN_evm.TU.Sc2ySwM_344.4820 Anthoceros agrestis HOM05D006284 ORTHO05D007793 4.4e-08 60.5 43 55.8
Peaxi162Scf00406g00314 Petunia axillaris HOM05D006284 ORTHO05D007793 7.4e-08 59.7 38 73.7
Zm00001eb012550 Zea mays HOM05D006284 ORTHO05D007793 9.7e-08 59.3 42 59.5
Ah.08g219180 Amaranthus hybridus HOM05D006284 ORTHO05D007793 1.3e-07 58.9 41 68.3
Gohir.A07G096400 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.7e-07 58.5 37 73.0
Mapoly0004s0146 Marchantia polymorpha HOM05D006284 ORTHO05D007793 2.2e-07 58.2 40 65.0
Oeu056739.1 Olea europaea HOM05D006284 ORTHO05D007793 2.2e-07 58.2 37 73.0
Gohir.D07G100800 Gossypium hirsutum HOM05D006284 ORTHO05D007793 2.8e-07 57.8 39 69.2
SMO165G0091 Selaginella moellendorffii HOM05D006284 ORTHO05D007793 2.4e-06 54.7 42 52.4


User provided reference genes

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