Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 3.7e-202 708.0 357 100.0
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 8.4e-162 573.9 348 81.9
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.7e-160 568.9 348 81.6
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 7.8e-160 567.4 343 82.2
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.3e-159 566.6 349 81.4
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.0e-159 565.5 343 81.9
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 4.3e-158 561.6 348 81.0
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 4.3e-158 561.6 348 80.7
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 5.6e-158 561.2 344 82.3
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 6.2e-157 557.8 348 79.3
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 8.1e-157 557.4 347 78.1
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 5.8e-155 551.2 352 80.1
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 1.2e-152 543.5 345 78.0
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.6e-152 543.1 347 78.1
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 2.7e-152 542.3 345 80.3
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 2.7e-152 542.3 357 75.6
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 3.5e-152 542.0 348 77.3
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 3.5e-152 542.0 350 76.6
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.0e-151 540.4 345 78.0
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 6.6e-151 537.7 350 76.0
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 1.9e-150 536.2 350 76.0
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 3.3e-150 535.4 350 75.4
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 5.6e-150 534.6 350 75.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 9.6e-150 533.9 350 76.6
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 1.3e-149 533.5 350 74.6
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 2.1e-149 532.7 353 77.3
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 3.6e-149 531.9 350 74.3
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.4e-148 530.0 352 77.3
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.4e-148 529.3 345 77.4
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 4.0e-148 528.5 354 76.0
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 5.3e-148 528.1 345 77.1
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.2e-147 526.9 345 77.1
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.2e-147 526.9 345 76.8
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 1.5e-147 526.6 345 77.1
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.5e-147 526.6 346 75.7
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 2.0e-147 526.2 347 76.4
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.4e-147 525.4 355 75.5
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 4.5e-147 525.0 355 76.9
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 9.9e-147 523.9 343 77.3
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 2.2e-146 522.7 345 73.6
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 2.9e-146 522.3 354 74.6
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 2.9e-146 522.3 348 75.9
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 2.9e-146 522.3 345 76.2
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 3.8e-146 521.9 350 75.1
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 4.9e-146 521.5 345 77.7
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 3.2e-145 518.8 349 75.4
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 4.2e-145 518.5 351 75.2
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 7.1e-145 517.7 345 76.2
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 7.1e-145 517.7 345 75.9
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 2.1e-144 516.2 344 75.0
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 2.7e-144 515.8 341 75.7
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 2.7e-144 515.8 345 75.9
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 2.7e-144 515.8 345 76.2
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 4.6e-144 515.0 343 73.5
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 6.0e-144 514.6 342 75.1
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 6.0e-144 514.6 349 74.8
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 7.9e-144 514.2 344 74.4
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 1.3e-143 513.5 343 73.5
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 1.3e-143 513.5 343 73.5
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 1.3e-143 513.5 343 73.5
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.3e-143 513.5 349 75.9
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 1.8e-143 513.1 343 73.5
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.3e-143 512.7 354 74.6
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 3.0e-143 512.3 341 76.0
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 3.0e-143 512.3 349 73.1
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 3.0e-143 512.3 344 75.3
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 6.7e-143 511.1 343 73.2
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 6.7e-143 511.1 344 74.4
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 2.5e-142 509.2 343 73.2
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 9.6e-142 507.3 353 72.8
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 1.6e-141 506.5 349 72.2
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 2.1e-141 506.1 339 76.1
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.8e-141 505.8 377 69.5
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.7e-141 505.4 337 75.4
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 3.7e-141 505.4 354 70.9
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 1.4e-140 503.4 342 76.0
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.4e-140 503.4 336 76.2
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 2.4e-140 502.7 371 69.5
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 1.2e-139 500.4 344 74.1
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 1.2e-139 500.4 344 72.7
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 4.9e-138 495.0 368 68.2
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 6.5e-138 494.6 339 71.7
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 7.9e-136 487.6 354 70.9
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 3.0e-135 485.7 382 65.4
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 6.3e-133 478.0 358 68.4
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.2e-131 473.8 297 76.8
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 4.5e-131 471.9 331 74.9
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 2.9e-130 469.2 395 63.5
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 2.5e-129 466.1 346 66.8
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 7.2e-129 464.5 311 75.2
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 3.6e-128 462.2 377 65.5
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.8e-127 459.9 349 69.3
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 5.1e-127 458.4 345 66.4
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 6.7e-127 458.0 299 79.6
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 1.6e-125 453.4 297 73.1
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 1.1e-124 450.7 292 80.5
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 1.4e-124 450.3 293 79.5
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 3.1e-124 449.1 311 74.0
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 1.2e-123 447.2 304 76.3
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 1.0e-122 444.1 304 76.3
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.8e-122 442.2 295 77.6
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.1e-120 436.4 295 76.6
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 4.6e-120 435.3 294 71.1
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 3.9e-119 432.2 352 66.2
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 5.1e-119 431.8 300 73.3
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 2.0e-118 429.9 277 74.0
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 4.5e-115 418.7 292 73.6
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 2.9e-114 416.0 304 70.7
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 7.2e-113 411.4 251 79.3
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 3.6e-112 409.1 302 70.5
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 6.1e-112 408.3 309 68.0
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 2.0e-110 403.3 251 77.3
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 4.5e-107 392.1 345 61.7
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 5.0e-106 388.7 295 67.1
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 6.5e-106 388.3 238 79.0
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.0e-103 380.9 247 78.1
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 4.4e-102 375.6 232 82.3
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 6.3e-101 371.7 389 56.3
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.4e-100 370.5 342 53.8
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 7.0e-100 368.2 342 53.2
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 5.9e-99 365.2 244 79.1
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.0e-98 364.4 256 75.4
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 6.1e-96 355.1 250 75.2
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 4.0e-95 352.4 257 72.4
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 8.3e-93 344.7 342 52.3
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 2.7e-91 339.7 304 60.9
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.0e-90 337.8 332 53.0
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 4.0e-87 325.9 250 68.0
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.8e-84 317.0 285 54.0
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.7e-82 310.5 218 74.3
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.3e-81 305.8 224 70.1
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.4e-79 300.8 187 77.0
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 1.2e-78 297.7 323 46.7
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 2.5e-73 280.0 195 70.8
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 8.1e-64 248.4 360 44.4
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 1.2e-56 224.6 183 63.9
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 6.2e-56 222.2 156 73.1
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 1.2e-46 191.4 174 61.5
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 1.2e-30 138.3 95 68.4
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 2.3e-26 124.0 69 79.7
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 6.7e-26 122.5 69 78.3
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 6.7e-26 122.5 70 78.6
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 6.7e-26 122.5 69 78.3
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 1.9e-25 120.9 69 78.3
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 1.4e-23 114.8 124 54.8
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 1.8e-23 114.4 62 80.6
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 5.1e-18 96.3 94 54.3
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 5.3e-07 59.7 46 69.6
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 2.0e-06 57.8 34 79.4


User provided reference genes

Program Settings