Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.1e-128 463.4 238 100.0
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.3e-81 307.0 234 68.8
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 2.8e-81 305.8 223 70.4
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.8e-80 303.1 235 67.2
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 3.1e-80 302.4 224 70.5
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 9.1e-80 300.8 224 70.1
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 2.0e-79 299.7 223 70.0
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.7e-79 299.3 234 69.7
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 4.5e-79 298.5 220 69.5
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 5.9e-79 298.1 234 69.2
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 8.5e-78 294.3 200 75.5
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 7.2e-77 291.2 234 67.1
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 9.4e-77 290.8 234 66.2
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 1.2e-76 290.4 234 67.1
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 6.1e-76 288.1 226 66.8
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.4e-75 287.0 234 65.4
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 1.4e-75 287.0 224 67.9
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 2.3e-75 286.2 234 66.7
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 4.0e-75 285.4 234 65.0
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 2.6e-74 282.7 238 63.4
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 2.6e-74 282.7 238 63.4
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 4.4e-74 282.0 224 66.1
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 5.7e-74 281.6 234 64.1
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 7.5e-74 281.2 199 71.9
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 7.5e-74 281.2 237 66.2
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 1.3e-73 280.4 237 66.2
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 1.3e-73 280.4 237 65.8
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.3e-73 280.4 234 64.5
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 2.2e-73 279.6 235 63.4
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 2.8e-73 279.3 220 64.1
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 2.8e-73 279.3 239 63.6
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 4.8e-73 278.5 220 65.9
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.8e-73 278.5 236 64.4
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.3e-73 278.1 237 65.4
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 8.3e-73 277.7 234 64.1
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 1.1e-72 277.3 231 63.6
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.4e-72 276.9 223 66.8
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 1.8e-72 276.6 232 63.4
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 1.8e-72 276.6 231 64.1
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.1e-72 275.8 236 64.0
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 5.4e-72 275.0 252 59.5
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 5.4e-72 275.0 225 66.2
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 1.2e-71 273.9 235 64.7
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 1.2e-71 273.9 222 65.8
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 2.0e-71 273.1 231 64.1
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 4.5e-71 271.9 237 61.2
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 4.5e-71 271.9 225 64.4
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 5.9e-71 271.6 225 64.9
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 7.7e-71 271.2 233 63.1
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 1.0e-70 270.8 237 61.2
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 1.3e-70 270.4 253 58.9
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 1.3e-70 270.4 209 67.5
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.7e-70 270.0 228 63.6
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 1.7e-70 270.0 238 61.8
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 2.9e-70 269.2 252 59.9
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 5.0e-70 268.5 250 60.4
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 8.6e-70 267.7 249 57.8
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 8.6e-70 267.7 250 58.0
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.1e-69 267.3 220 67.7
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 1.1e-69 267.3 232 62.5
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 1.9e-69 266.5 236 58.1
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.5e-69 266.2 246 57.7
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 3.3e-69 265.8 238 63.9
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 4.2e-69 265.4 237 59.5
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.1e-68 263.1 222 64.0
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 3.0e-67 259.2 235 61.7
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 3.0e-67 259.2 202 67.3
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 9.8e-66 254.2 234 57.7
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 1.3e-65 253.8 205 66.8
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 3.7e-65 252.3 231 59.3
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 8.3e-65 251.1 205 64.4
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 1.4e-64 250.4 234 58.1
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 2.4e-64 249.6 225 60.9
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 3.1e-64 249.2 225 60.9
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 3.1e-64 249.2 238 58.8
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 5.4e-64 248.4 229 60.7
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 7.0e-64 248.1 235 59.6
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 9.2e-64 247.7 239 59.0
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 1.6e-63 246.9 240 57.5
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 2.0e-63 246.5 234 57.3
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 2.0e-63 246.5 224 61.6
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 4.5e-63 245.4 199 64.3
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.0e-62 244.2 234 59.4
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 6.6e-62 241.5 203 64.0
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 1.1e-61 240.7 262 54.2
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 1.1e-61 240.7 231 59.7
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 7.3e-61 238.0 207 63.8
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.2e-60 237.3 208 60.6
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 6.1e-60 235.0 172 71.5
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 2.3e-59 233.0 172 70.9
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 3.1e-59 232.6 210 59.0
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 9.8e-58 227.6 200 62.0
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.9e-57 226.1 179 65.4
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 4.6e-55 218.8 149 73.8
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.6e-52 210.3 156 68.6
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 5.4e-48 195.3 216 53.7
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 1.6e-44 183.7 239 45.6
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.8e-44 183.0 238 45.8
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 2.2e-41 173.3 199 51.3
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.4e-40 169.9 223 48.4
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 7.1e-40 168.3 164 58.5
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 3.0e-38 162.9 198 47.5
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 7.3e-37 158.3 215 44.7
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 2.8e-36 156.4 195 46.2
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 2.8e-36 156.4 155 54.2
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 4.7e-36 155.6 222 44.1
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 7.6e-34 148.3 112 68.8
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 2.4e-32 143.3 152 50.0
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.2e-32 142.5 93 74.2
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 2.3e-22 110.2 164 42.1
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 6.6e-22 108.6 151 45.0
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 6.9e-19 98.6 87 59.8
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.2e-18 97.8 115 42.6
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 1.6e-15 87.4 112 48.2
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 2.5e-13 80.1 217 31.3
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 6.0e-07 58.9 35 71.4
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.3e-06 57.8 51 56.9
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 8.7e-06 55.1 87 41.4
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 8.7e-06 55.1 87 41.4


User provided reference genes

Program Settings