Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12460 Coffea canephora HOM05D007212 ORTHO05D009094 1.3e-84 316.2 152 100.0
Hma1.2p1_0094F.1_g047150 Hydrangea macrophylla HOM05D007212 ORTHO05D009094 1.6e-13 80.1 78 52.6
CSS0026864 Camellia sinensis var. sinensis HOM05D007212 ORTHO05D009094 2.8e-13 79.3 76 53.9
FvH4_3g35360 Fragaria vesca HOM05D007212 ORTHO05D009094 1.0e-12 77.4 84 50.0
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 2.3e-12 76.3 84 48.8
FAN16G0386 Fragaria x ananassa HOM05D007212 ORTHO05D009094 5.2e-12 75.1 83 49.4
RcHm_v2.0_Chr5g0063471 Rosa chinensis HOM05D007212 ORTHO05D009094 5.2e-12 75.1 84 46.4
DCAR_015608 Daucus carota HOM05D007212 ORTHO05D009094 8.9e-12 74.3 81 48.1
FAN11G2747 Fragaria x ananassa HOM05D007212 ORTHO05D009094 8.9e-12 74.3 84 48.8
Lj3g0025740 Lotus japonicus HOM05D007212 ORTHO05D009094 1.2e-11 73.9 49 65.3
Psat7g177640 Pisum sativum HOM05D007212 ORTHO05D009094 2.0e-11 73.2 54 57.4
TPR.G17150 Trifolium pratense HOM05D007212 ORTHO05D009094 2.6e-11 72.8 50 64.0
MSTRG.21188 Avicennia marina HOM05D007212 ORTHO05D009094 3.4e-11 72.4 50 58.0
Medtr4g075270 Medicago truncatula HOM05D007212 ORTHO05D009094 4.4e-11 72.0 86 48.8
PGR119G1050 Punica granatum HOM05D007212 ORTHO05D009094 7.5e-11 71.2 50 62.0
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 9.8e-11 70.9 73 53.4
PGR142G1175 Punica granatum HOM05D007212 ORTHO05D009094 9.8e-11 70.9 48 64.6
Rhsim13G0085700 Rhododendron simsii HOM05D007212 ORTHO05D009094 9.8e-11 70.9 86 46.5
Lj1P206T25 Lonicera japonica HOM05D007212 ORTHO05D009094 1.3e-10 70.5 50 60.0
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 1.7e-10 70.1 91 45.1
Migut.G01106 Erythranthe guttata HOM05D007212 ORTHO05D009094 2.2e-10 69.7 70 48.6
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 2.2e-10 69.7 70 48.6
arahy.Tifrunner.gnm1.ann1.0V2A2H Arachis hypogaea HOM05D007212 ORTHO05D009094 4.9e-10 68.6 75 46.7
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 4.9e-10 68.6 75 46.7
Haze_24045 Corylus avellana HOM05D007212 ORTHO05D009094 6.4e-10 68.2 76 46.1
HanXRQChr08g0227881 Helianthus annuus HOM05D007212 ORTHO05D009094 6.4e-10 68.2 82 47.6
Prupe.6G082100 Prunus persica HOM05D007212 ORTHO05D009094 8.3e-10 67.8 57 56.1
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 1.1e-09 67.4 50 58.0
Sed0018920 Sechium edule HOM05D007212 ORTHO05D009094 1.4e-09 67.0 50 60.0
TAR633G0773 Trochodendron aralioides HOM05D007212 ORTHO05D009094 2.4e-09 66.2 80 43.8
SalBow3G0436 Salvia bowleyana HOM05D007212 ORTHO05D009094 3.2e-09 65.9 50 54.0
Cfa011459 Carpinus fangiana HOM05D007212 ORTHO05D009094 4.1e-09 65.5 76 46.1
CiPaw.14G071200 Carya illinoinensis HOM05D007212 ORTHO05D009094 4.1e-09 65.5 62 54.8
vmacro03100 Vaccinium macrocarpon HOM05D007212 ORTHO05D009094 4.1e-09 65.5 78 43.6
Atru.chr3.3834 Acer truncatum HOM05D007212 ORTHO05D009094 5.4e-09 65.1 60 51.7
QL01p032998 Quercus lobata HOM05D007212 ORTHO05D009094 5.4e-09 65.1 78 50.0
VMungo1127G0797 Vigna mungo HOM05D007212 ORTHO05D009094 7.0e-09 64.7 50 58.0
Glyma.11G098900 Glycine max HOM05D007212 ORTHO05D009094 9.2e-09 64.3 49 57.1
Glyma.12G024900 Glycine max HOM05D007212 ORTHO05D009094 9.2e-09 64.3 50 56.0
Phvul.011G027200 Phaseolus vulgaris HOM05D007212 ORTHO05D009094 9.2e-09 64.3 50 58.0
Sabra16G0142600 Salix brachista HOM05D007212 ORTHO05D009094 1.6e-08 63.5 50 62.0
GSVIVG01025017001 Vitis vinifera HOM05D007212 ORTHO05D009094 2.7e-08 62.8 48 60.4
Aqoxy4G02992 Aquilegia oxysepala HOM05D007212 ORTHO05D009094 4.6e-08 62.0 75 42.7
MELO3C035453.2 Cucumis melo HOM05D007212 ORTHO05D009094 4.6e-08 62.0 50 54.0
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 4.6e-08 62.0 81 40.7
Nn2g10429 Nelumbo nucifera HOM05D007212 ORTHO05D009094 7.8e-08 61.2 50 58.0
SGA_v2.0_scaffold134G34680 Striga asiatica HOM05D007212 ORTHO05D009094 1.0e-07 60.8 86 36.0
Ciclev10027786m.g Citrus clementina HOM05D007212 ORTHO05D009094 1.3e-07 60.5 88 45.5
CAN.G764.6 Capsicum annuum HOM05D007212 ORTHO05D009094 2.3e-07 59.7 51 54.9
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 3.0e-07 59.3 50 52.0
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 6.6e-07 58.2 57 50.9
Lsat_1_v5_gn_9_22380 Lactuca sativa HOM05D007212 ORTHO05D009094 6.6e-07 58.2 87 42.5
Sc09g0001880 Simmondsia chinensis HOM05D007212 ORTHO05D009094 6.6e-07 58.2 54 51.9
MBI05_g20726_MAGBIO Magnolia biondii HOM05D007212 ORTHO05D009094 1.5e-06 57.0 87 39.1
TWI79G1118 Tripterygium wilfordii HOM05D007212 ORTHO05D009094 4.3e-06 55.5 63 47.6
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 9.5e-06 54.3 54 50.0


User provided reference genes

Program Settings