Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12430 Coffea canephora HOM05D000142 ORTHO05D000124 4.2e-29 130.6 61 100.0
Actinidia07051 Actinidia chinensis HOM05D000783 ORTHO05D000705 8.5e-14 79.7 49 75.5
Manes.11G133501 Manihot esculenta HOM05D000142 ORTHO05D000124 1.6e-12 75.5 56 66.1
CSS0001824 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D000124 2.1e-12 75.1 49 71.4
Sabra16G0142300 Salix brachista HOM05D000142 ORTHO05D000124 3.6e-12 74.3 41 85.4
Atru.chr10.487 Acer truncatum HOM05D000142 ORTHO05D000124 3.0e-11 71.2 42 73.8
Lalb_Chr19g0137701 Lupinus albus HOM05D000142 ORTHO05D000124 6.7e-11 70.1 46 69.6
Oeu058536.1 Olea europaea HOM05D000221 ORTHO05D000124 8.8e-11 69.7 51 62.7
Cfa011457 Carpinus fangiana HOM05D000142 ORTHO05D000124 1.5e-10 68.9 49 65.3
Haze_24042 Corylus avellana HOM05D000142 ORTHO05D000124 1.5e-10 68.9 49 65.3
QL01p005802 Quercus lobata HOM05D000142 ORTHO05D000124 1.5e-10 68.9 47 74.5
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 1.5e-10 68.9 49 59.2
Thecc.09G326600 Theobroma cacao HOM05D000142 ORTHO05D000124 2.6e-10 68.2 55 69.1
MSTRG.21185 Avicennia marina HOM05D000142 ORTHO05D000124 3.3e-10 67.8 45 66.7
COL.COLO4_18461 Corchorus olitorius HOM05D000142 ORTHO05D000124 3.3e-10 67.8 49 67.3
Migut.D02118 Erythranthe guttata HOM05D000142 ORTHO05D000124 3.3e-10 67.8 44 70.5
Dinv19243 Davidia involucrata HOM05D000142 ORTHO05D000124 4.4e-10 67.4 53 60.4
Potri.001G236300 Populus trichocarpa HOM05D000142 ORTHO05D000124 5.7e-10 67.0 41 80.5
Gorai.002G138600 Gossypium raimondii HOM05D000142 ORTHO05D000124 9.7e-10 66.2 47 68.1
Aqoxy4G02998 Aquilegia oxysepala HOM05D000142 ORTHO05D000124 1.3e-09 65.9 39 76.9
Nn2g12912 Nelumbo nucifera HOM05D000142 ORTHO05D000124 1.7e-09 65.5 38 78.9
Solyc04g016175.2 Solanum lycopersicum HOM05D000142 ORTHO05D000124 1.7e-09 65.5 54 57.4
Sopen04g008230 Solanum pennellii HOM05D000142 ORTHO05D000124 1.7e-09 65.5 54 57.4
ECA247G3146 Erigeron canadensis HOM05D000142 ORTHO05D000124 2.8e-09 64.7 43 72.1
Gohir.A01G126100 Gossypium hirsutum HOM05D000142 ORTHO05D000124 2.8e-09 64.7 47 66.0
HanXRQChr04g0106981 Helianthus annuus HOM05D000142 ORTHO05D000124 3.7e-09 64.3 46 63.0
Ciclev10029787m.g Citrus clementina HOM05D000142 ORTHO05D000124 4.8e-09 63.9 47 66.0
Eucgr.J02065 Eucalyptus grandis HOM05D000649 ORTHO05D000124 4.8e-09 63.9 48 66.7
Eucgr.L03666 Eucalyptus grandis HOM05D000142 ORTHO05D000124 4.8e-09 63.9 48 66.7
PSO478G1943 Papaver somniferum HOM05D000142 ORTHO05D000124 4.8e-09 63.9 41 68.3
GSVIVG01038128001 Vitis vinifera HOM05D000142 ORTHO05D000124 6.3e-09 63.5 44 70.5
Gohir.D01G113300 Gossypium hirsutum HOM05D000142 ORTHO05D000124 8.2e-09 63.2 47 66.0
FAN21G1758 Fragaria x ananassa HOM05D000142 ORTHO05D000124 1.1e-08 62.8 42 76.2
Nitab4.5_0000636g0080 Nicotiana tabacum HOM05D000142 ORTHO05D000124 1.1e-08 62.8 54 57.4
Nitab4.5_0011146g0020 Nicotiana tabacum HOM05D000142 ORTHO05D000124 1.1e-08 62.8 44 63.6
FvH4_3g35300 Fragaria vesca HOM05D000142 ORTHO05D000124 1.4e-08 62.4 42 76.2
FAN11G0213 Fragaria x ananassa HOM05D000142 ORTHO05D000124 1.4e-08 62.4 42 76.2
Hund27849 Selenicereus undatus HOM05D000142 ORTHO05D000124 1.8e-08 62.0 43 72.1
Hund27853 Selenicereus undatus HOM05D000142 ORTHO05D000124 1.8e-08 62.0 43 72.1
TWI31G0321 Tripterygium wilfordii HOM05D000142 ORTHO05D000124 2.4e-08 61.6 39 69.2
PSO017G2334 Papaver somniferum HOM05D000142 ORTHO05D000124 3.1e-08 61.2 41 65.9
Prupe.6G082400 Prunus persica HOM05D000142 ORTHO05D000124 3.1e-08 61.2 43 69.8
arahy.Tifrunner.gnm1.ann1.KKU7AB Arachis hypogaea HOM05D000142 ORTHO05D000124 4.1e-08 60.8 46 65.2
AUR62001827 Chenopodium quinoa HOM05D000142 ORTHO05D000124 4.1e-08 60.8 47 66.0
MD03G1098300 Malus domestica HOM05D000142 ORTHO05D000124 5.3e-08 60.5 43 69.8
TWI79G1253 Tripterygium wilfordii HOM05D000142 ORTHO05D000124 5.3e-08 60.5 38 71.1
Sc21g0007080 Simmondsia chinensis HOM05D000142 ORTHO05D000124 6.9e-08 60.1 36 77.8
RcHm_v2.0_Chr5g0063391 Rosa chinensis HOM05D000142 ORTHO05D000124 1.5e-07 58.9 39 76.9
DCAR_024370 Daucus carota HOM05D000142 ORTHO05D000124 2.0e-07 58.5 31 83.9
MD11G1144700 Malus domestica HOM05D000142 ORTHO05D000124 2.0e-07 58.5 42 69.0
FAN21G1739 Fragaria x ananassa HOM05D000142 ORTHO05D000124 3.4e-07 57.8 36 77.8
MBI05_g10359_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D000124 3.4e-07 57.8 43 67.4
Medtr4g063560 Medicago truncatula HOM05D000142 ORTHO05D000124 3.4e-07 57.8 45 60.0
Ca_19184_v3 Cicer arietinum L. HOM05D000142 ORTHO05D000124 4.5e-07 57.4 47 61.7
Psat7g217920 Pisum sativum HOM05D000142 ORTHO05D000124 5.9e-07 57.0 31 83.9
PGR119G0765 Punica granatum HOM05D000649 ORTHO05D000124 5.9e-07 57.0 40 60.0
VMungo1127G0929 Vigna mungo HOM05D000142 ORTHO05D000124 5.9e-07 57.0 42 64.3
AL215U10040 Arabidopsis lyrata HOM05D000142 ORTHO05D000124 1.3e-06 55.8 38 68.4
AUR62009614 Chenopodium quinoa HOM05D000142 ORTHO05D000124 1.3e-06 55.8 41 65.9
AT5G59865 Arabidopsis thaliana HOM05D000142 ORTHO05D000124 1.7e-06 55.5 43 67.4
FAN11G0066 Fragaria x ananassa HOM05D000142 ORTHO05D000124 1.7e-06 55.5 33 81.8
Phvul.011G066300 Phaseolus vulgaris HOM05D000142 ORTHO05D000124 1.7e-06 55.5 42 64.3
Os01g0974701 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D000124 2.2e-06 55.1 48 58.3
Glyma.12G065000 Glycine max HOM05D000142 ORTHO05D000124 2.9e-06 54.7 31 80.6
CANSAT54G0239 Cannabis sativa HOM05D000142 ORTHO05D000124 5.0e-06 53.9 34 73.5
CARHR273470 Cardamine hirsuta HOM05D000142 ORTHO05D000124 5.0e-06 53.9 37 62.2
Cc07_g04200 Coffea canephora HOM05D000142 ORTHO05D000124 5.0e-06 53.9 35 62.9
Glyma.11G141900 Glycine max HOM05D000142 ORTHO05D000124 6.5e-06 53.5 50 54.0
Carub.0008s2059 Capsella rubella HOM05D000142 ORTHO05D000124 8.5e-06 53.1 43 62.8
HPP92_021135 Vanilla planifolia HOM05D007849 ORTHO05D009964 8.5e-06 53.1 34 67.6
HPP92_021140 Vanilla planifolia HOM05D000142 ORTHO05D000124 8.5e-06 53.1 34 67.6


User provided reference genes

Program Settings